Variant report

Variant	rs10099148
Chromosome Location	chr8:10830017-10830018
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10094337	1.00[CHB][hapmap]
rs10096634	1.00[CHB][hapmap]
rs10097387	1.00[CHB][hapmap]
rs11250118	1.00[CHB][hapmap]
rs13263210	1.00[CHB][hapmap]
rs28631517	1.00[ASN][1000 genomes]
rs4484650	1.00[CEU][hapmap]
rs73537380	0.88[AFR][1000 genomes]
rs7816172	1.00[ASN][1000 genomes]
rs7837244	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521721	chr8:10802102-10836472	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10826000-10832600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:10829200-10830200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:10829400-10830200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr8:10829400-10830400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:10829400-10830600	Bivalent Enhancer	HSMMtube	muscle
6	chr8:10829400-10830600	Enhancers	K562	blood
7	chr8:10829600-10830200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:10829600-10830200	Enhancers	Placenta Amnion	Placenta Amnion
9	chr8:10829800-10830200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:10829800-10830400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr8:10830000-10830200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:10830000-10830200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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