Variant report

Variant	rs10099764
Chromosome Location	chr8:10337090-10337091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10086382	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10090747	1.00[AMR][1000 genomes]
rs10091787	1.00[EUR][1000 genomes]
rs10104007	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10104413	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10109945	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10112878	1.00[EUR][1000 genomes]
rs10216532	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10216827	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992333	1.00[AMR][1000 genomes]
rs11995973	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12335047	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17384171	0.88[AFR][1000 genomes]
rs28412714	0.88[AFR][1000 genomes]
rs28534846	1.00[AMR][1000 genomes]
rs28545293	1.00[AMR][1000 genomes]
rs28556735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28564130	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28590472	1.00[AMR][1000 genomes]
rs28607769	1.00[AMR][1000 genomes]
rs28634875	0.88[AFR][1000 genomes]
rs28716710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56370093	1.00[EUR][1000 genomes]
rs58346791	1.00[AMR][1000 genomes]
rs58610804	1.00[EUR][1000 genomes]
rs59499775	1.00[EUR][1000 genomes]
rs59657261	1.00[AMR][1000 genomes]
rs73527780	1.00[EUR][1000 genomes]
rs73536239	1.00[EUR][1000 genomes]
rs73538100	1.00[EUR][1000 genomes]
rs73540110	1.00[EUR][1000 genomes]
rs73542161	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv610267	chr8:10268736-10526742	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv890349	chr8:10294330-10355302	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1019090	chr8:10303099-10369061	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1024976	chr8:10303099-10385361	Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1030856	chr8:10303099-10439064	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv890350	chr8:10305317-10346588	Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv610268	chr8:10331636-10486652	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10328200-10338000	Strong transcription	Fetal Brain Female	brain
2	chr8:10329000-10345600	Weak transcription	Brain Hippocampus Middle	brain
3	chr8:10329200-10339200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr8:10329200-10340400	Weak transcription	Brain Angular Gyrus	brain
5	chr8:10329200-10342200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:10329800-10337200	Weak transcription	Left Ventricle	heart
7	chr8:10330200-10338000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr8:10331000-10337400	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr8:10331000-10341000	Weak transcription	Spleen	Spleen
10	chr8:10331000-10341800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr8:10331200-10342800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:10332400-10339400	Weak transcription	Ovary	ovary
13	chr8:10332600-10340400	Weak transcription	Gastric	stomach
14	chr8:10332800-10339800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr8:10332800-10344000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:10335200-10339800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:10335400-10338200	Weak transcription	Liver	Liver
18	chr8:10335400-10342200	Strong transcription	Brain Germinal Matrix	brain
19	chr8:10335400-10355200	Weak transcription	Fetal Brain Male	brain
20	chr8:10335600-10337200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr8:10335600-10339400	Weak transcription	Pancreas	Pancrea
22	chr8:10335600-10341200	Weak transcription	Adipose Nuclei	Adipose
23	chr8:10335800-10357600	Weak transcription	Brain Anterior Caudate	brain
24	chr8:10336200-10350200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr8:10336600-10337200	ZNF genes & repeats	Lung	lung
26	chr8:10336600-10337600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:10336600-10337800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr8:10336800-10337800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr8:10336800-10337800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr8:10337000-10337200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr8:10337000-10338000	Strong transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links