Variant report

Variant	rs10100839
Chromosome Location	chr8:107705688-107705689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107700975..107704307-chr8:107704441..107706553,4	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10087077	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10088694	0.83[EUR][1000 genomes]
rs10089357	0.85[EUR][1000 genomes]
rs10089618	0.83[EUR][1000 genomes]
rs10089890	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10090534	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10091390	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10091611	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10092665	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10099361	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10101102	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10102112	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10104941	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10106834	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10108240	0.85[EUR][1000 genomes]
rs10110610	0.83[EUR][1000 genomes]
rs10283128	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10283130	0.81[EUR][1000 genomes]
rs12544138	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12547372	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12547608	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12548149	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13254031	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13255878	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13259080	0.81[EUR][1000 genomes]
rs13268490	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16875002	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16875065	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16875066	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1872282	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2035515	0.83[EUR][1000 genomes]
rs2126580	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28422868	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28808577	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28921372	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28921395	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35108468	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35499727	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35919651	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36011510	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3736179	0.85[EUR][1000 genomes]
rs3779996	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6651199	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7461484	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9297385	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107672200-107718800	Weak transcription	Psoas Muscle	Psoas
2	chr8:107672400-107718600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:107677600-107709400	Weak transcription	Pancreas	Pancrea
4	chr8:107677600-107718800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr8:107679200-107738200	Weak transcription	Right Ventricle	heart
6	chr8:107681200-107730200	Weak transcription	Small Intestine	intestine
7	chr8:107683800-107718800	Weak transcription	Hela-S3	cervix
8	chr8:107686000-107709200	Weak transcription	Gastric	stomach
9	chr8:107686200-107709200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:107686400-107709000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:107686400-107709000	Weak transcription	Esophagus	oesophagus
12	chr8:107686400-107709000	Weak transcription	Spleen	Spleen
13	chr8:107686600-107709000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:107686600-107709000	Weak transcription	Fetal Stomach	stomach
15	chr8:107686600-107711800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr8:107687200-107707600	Weak transcription	Fetal Intestine Small	intestine
17	chr8:107687200-107709000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:107688000-107713000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:107688600-107709200	Weak transcription	Aorta	Aorta
20	chr8:107688600-107718600	Weak transcription	Stomach Mucosa	stomach
21	chr8:107690200-107730600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr8:107690400-107709200	Weak transcription	Ovary	ovary
23	chr8:107691600-107718600	Weak transcription	K562	blood
24	chr8:107692000-107738400	Weak transcription	Colon Smooth Muscle	Colon
25	chr8:107692600-107706400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr8:107692800-107725800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:107693000-107709800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr8:107693600-107706600	Strong transcription	Liver	Liver
29	chr8:107694600-107719000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr8:107694600-107738000	Weak transcription	Fetal Heart	heart
31	chr8:107695000-107725800	Weak transcription	NHLF	lung
32	chr8:107695800-107718600	Weak transcription	NHEK	skin
33	chr8:107696000-107718800	Weak transcription	A549	lung
34	chr8:107696000-107737200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr8:107696200-107718800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr8:107697200-107709400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr8:107697400-107709200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr8:107697800-107707800	Weak transcription	Placenta	Placenta
39	chr8:107697800-107718400	Weak transcription	HUVEC	blood vessel
40	chr8:107697800-107718800	Weak transcription	Osteobl	bone
41	chr8:107697800-107719000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr8:107697800-107723800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr8:107698000-107709400	Weak transcription	Left Ventricle	heart
44	chr8:107698000-107718600	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr8:107698000-107718600	Weak transcription	NH-A	brain
46	chr8:107698000-107719000	Weak transcription	Fetal Kidney	kidney
47	chr8:107698000-107723000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr8:107698200-107706400	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr8:107698200-107708400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr8:107698200-107709400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links