Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:64029588..64030189-chr8:64177655..64178296,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10086139	0.84[EUR][1000 genomes]
rs10088859	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs10092952	0.82[AMR][1000 genomes]
rs10095945	0.94[ASN][1000 genomes]
rs10098776	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs10108512	0.83[CHB][hapmap];0.86[CHD][hapmap]
rs10108613	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs10110180	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10283333	0.86[EUR][1000 genomes]
rs11988945	0.92[EUR][1000 genomes]
rs12708014	0.92[EUR][1000 genomes]
rs13266641	0.84[EUR][1000 genomes]
rs1435459	0.90[EUR][1000 genomes]
rs16930250	0.84[CHB][hapmap]
rs17209651	0.81[EUR][1000 genomes]
rs2043525	0.92[CEU][hapmap];0.92[GIH][hapmap];0.89[TSI][hapmap]
rs2217828	0.92[EUR][1000 genomes]
rs28540594	0.87[EUR][1000 genomes]
rs28546639	0.94[ASN][1000 genomes]
rs3924926	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4074214	0.86[ASN][1000 genomes]
rs6991201	0.82[EUR][1000 genomes]
rs6991542	0.83[ASN][1000 genomes]
rs6997778	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7011915	0.83[ASN][1000 genomes]
rs7016339	0.92[CEU][hapmap]
rs73684829	0.86[ASN][1000 genomes]
rs7463230	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7465150	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1816645	chr8:64161544-64184282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10102076	CA8	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64173000-64178400	Weak transcription	HSMM	muscle
2	chr8:64174200-64180400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:64174400-64178000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr8:64176800-64178200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr8:64177400-64178000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:64177600-64179200	Enhancers	Fetal Intestine Small	intestine

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