Variant report

Variant	rs10107381
Chromosome Location	chr8:63769408-63769409
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10092338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10102831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282884	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282893	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504356	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504357	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504358	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504359	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480119	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1600534	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929879	0.86[EUR][1000 genomes]
rs17182014	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17266243	0.93[EUR][1000 genomes]
rs17275944	0.86[EUR][1000 genomes]
rs1904571	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2085251	0.86[EUR][1000 genomes]
rs2085253	0.86[EUR][1000 genomes]
rs28387373	0.83[EUR][1000 genomes]
rs28494990	0.86[EUR][1000 genomes]
rs28549153	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28767608	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28825674	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28881312	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4636200	0.93[EUR][1000 genomes]
rs55641737	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55919907	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55933624	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56047308	0.97[EUR][1000 genomes]
rs56252369	0.93[EUR][1000 genomes]
rs56653385	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58210668	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62508064	0.83[EUR][1000 genomes]
rs62509402	0.95[EUR][1000 genomes]
rs62510765	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62510766	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62510767	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510768	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510770	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510772	0.86[AFR][1000 genomes]
rs62510773	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62510774	0.82[EUR][1000 genomes]
rs62510775	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62510778	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510779	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510780	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510781	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510782	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510783	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510825	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510826	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510836	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6999540	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72653293	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72653295	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72653296	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72653299	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72655008	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72655038	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9785076	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831341	chr8:63658694-63852213	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv890961	chr8:63708519-63773787	Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv890962	chr8:63708519-63812686	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10107381	GGH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63759000-63776400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63768800-63769600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links