Variant report

Variant	rs10107485
Chromosome Location	chr8:10004221-10004222
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11249969	0.85[CHB][hapmap]
rs1160369	0.95[CHB][hapmap];0.83[YRI][hapmap];0.81[ASN][1000 genomes]
rs11774411	0.90[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs11783851	0.90[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs11785434	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs11785454	0.81[ASN][1000 genomes]
rs12542030	0.95[JPT][hapmap];0.81[YRI][hapmap]
rs12545469	0.86[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.82[ASN][1000 genomes]
rs12545775	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12545788	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12545826	0.84[JPT][hapmap]
rs12547884	0.90[CHB][hapmap];0.88[ASN][1000 genomes]
rs12549943	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs12550244	0.86[CHB][hapmap]
rs12674871	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs12679328	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs12680389	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs13249013	0.89[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13256357	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs13261836	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs1466555	0.87[ASN][1000 genomes]
rs1484645	0.95[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs1564808	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs17151142	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs17151188	0.82[CHB][hapmap]
rs17151190	0.95[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs17151193	0.81[CHB][hapmap]
rs17151201	0.90[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs17155393	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs1984863	0.86[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs2016221	0.85[ASN][1000 genomes]
rs2046398	0.82[CHB][hapmap]
rs2409632	0.85[JPT][hapmap]
rs2898242	0.95[CHB][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs3735823	0.86[CHB][hapmap]
rs4294187	0.86[CHB][hapmap]
rs4840462	0.85[JPT][hapmap]
rs4840463	0.81[CHB][hapmap]
rs4841279	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs4841283	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs625218	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs66602888	0.90[ASN][1000 genomes]
rs6983566	0.85[CHB][hapmap]
rs6985791	0.82[JPT][hapmap]
rs6997865	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs7008407	0.95[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs7012601	0.82[ASN][1000 genomes]
rs7016690	0.82[ASN][1000 genomes]
rs72626643	0.90[ASN][1000 genomes]
rs7830843	0.83[ASN][1000 genomes]
rs9329215	0.95[CHB][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs963593	0.81[CHB][hapmap]
rs9644681	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1034343	chr8:9948342-10014155	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1850829	chr8:9958321-10045451	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9991200-10004600	Weak transcription	Esophagus	oesophagus
2	chr8:9992200-10004800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:9992200-10004800	Weak transcription	Right Ventricle	heart
4	chr8:9996400-10020200	Weak transcription	Pancreas	Pancrea
5	chr8:9996600-10004600	Weak transcription	Gastric	stomach
6	chr8:9996600-10004800	Weak transcription	Left Ventricle	heart
7	chr8:9996600-10005000	Weak transcription	Right Atrium	heart
8	chr8:9996600-10036200	Weak transcription	Primary T cells from cord blood	blood
9	chr8:9996800-10009600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr8:9997000-10010200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr8:10001400-10004800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:10001600-10005000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:10001800-10005800	Enhancers	Fetal Brain Male	brain
14	chr8:10002400-10007400	Weak transcription	Brain Substantia Nigra	brain
15	chr8:10002400-10007600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr8:10002400-10009400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr8:10002600-10004800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr8:10002600-10007400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr8:10002600-10009600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr8:10002800-10007400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr8:10002800-10007600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr8:10002800-10007600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr8:10002800-10007600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr8:10002800-10007600	Weak transcription	Brain Angular Gyrus	brain
25	chr8:10002800-10007600	Weak transcription	Brain Anterior Caudate	brain
26	chr8:10002800-10007800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:10003000-10007400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:10003000-10007400	Weak transcription	Brain Hippocampus Middle	brain
29	chr8:10003000-10007600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr8:10003400-10005600	Enhancers	Fetal Brain Female	brain
31	chr8:10003400-10026600	Weak transcription	Liver	Liver
32	chr8:10003800-10004800	Enhancers	Brain Germinal Matrix	brain
33	chr8:10003800-10007400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:10004000-10004400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr8:10004000-10004800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr8:10004000-10005000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr8:10004200-10004400	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links