Variant report

Variant	rs10107557
Chromosome Location	chr8:62380439-62380440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:62379782..62380618-chr8:62475892..62476541,2	K562	blood:
2	chr8:62380156..62380925-chr8:62475815..62476351,2	MCF-7	breast:
3	chr8:62379715..62380732-chr8:62427877..62428562,3	MCF-7	breast:
4	chr8:62247832..62248787-chr8:62379922..62380668,2	MCF-7	breast:
5	chr8:62379524..62380909-chr8:62475525..62476519,9	MCF-7	breast:
6	chr8:62156342..62157195-chr8:62380225..62380826,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10093414	0.84[CEU][hapmap]
rs10504327	0.84[CEU][hapmap]
rs10504328	0.84[CEU][hapmap]
rs10504330	0.92[CEU][hapmap]
rs13258160	0.84[CEU][hapmap]
rs16927347	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16927446	0.92[CEU][hapmap]
rs16927448	0.92[CEU][hapmap]
rs16927460	0.92[CEU][hapmap]
rs16927536	0.84[CEU][hapmap]
rs16927566	0.84[CEU][hapmap]
rs17200413	0.84[CEU][hapmap]
rs17200553	0.84[CEU][hapmap]
rs17200623	0.84[CEU][hapmap]
rs17201182	0.84[CEU][hapmap]
rs17201219	0.84[CEU][hapmap]
rs17788825	0.92[CEU][hapmap]
rs17788873	0.92[CEU][hapmap]
rs17789341	0.84[CEU][hapmap]
rs17790020	0.83[CEU][hapmap]
rs17790471	0.84[CEU][hapmap]
rs17790639	0.84[CEU][hapmap]
rs4487757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6983123	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000970	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001072	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005203	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012122	0.84[JPT][hapmap]
rs73259348	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821162	0.83[CEU][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs7824533	0.84[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes]
rs7830314	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7831797	0.84[CEU][hapmap];1.00[TSI][hapmap]
rs7839684	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1027742	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv539633	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1021377	chr8:62214279-62596721	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv539634	chr8:62214279-62596721	ZNF genes & repeats Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1029046	chr8:62224341-62535277	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv521898	chr8:62364663-62419120	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62364400-62380800	Weak transcription	Brain Germinal Matrix	brain
2	chr8:62366800-62383200	Weak transcription	Brain Anterior Caudate	brain
3	chr8:62367400-62381600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:62370600-62386600	Weak transcription	Fetal Brain Male	brain
5	chr8:62375600-62383000	Weak transcription	Fetal Brain Female	brain
6	chr8:62379000-62381200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr8:62380000-62380600	Active TSS	K562	blood
8	chr8:62380200-62381200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr8:62380200-62381200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:62380200-62381400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr8:62380200-62381400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:62380200-62381400	Weak transcription	Liver	Liver
13	chr8:62380200-62381400	Weak transcription	NHEK	skin
14	chr8:62380400-62380800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr8:62380400-62380800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr8:62380400-62380800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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