Variant report

Variant	rs10107926
Chromosome Location	chr8:48252699-48252700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:48237525..48239836-chr8:48252461..48254752,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10481296	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11989844	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs12216833	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1552667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];1.00[EUR][1000 genomes]
rs16927307	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs55841214	0.87[EUR][1000 genomes]
rs55918561	0.91[EUR][1000 genomes]
rs56107210	0.89[EUR][1000 genomes]
rs56391539	0.87[EUR][1000 genomes]
rs58828084	0.89[EUR][1000 genomes]
rs6472453	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs6989958	0.94[EUR][1000 genomes]
rs6992139	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs7011833	0.96[EUR][1000 genomes]
rs72644585	0.87[EUR][1000 genomes]
rs72644587	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72644597	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72644602	0.92[EUR][1000 genomes]
rs72646317	0.87[EUR][1000 genomes]
rs72646321	0.94[EUR][1000 genomes]
rs72646324	0.94[EUR][1000 genomes]
rs72646330	0.98[EUR][1000 genomes]
rs72646348	0.91[EUR][1000 genomes]
rs72646350	0.91[EUR][1000 genomes]
rs7822371	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7829543	0.91[EUR][1000 genomes]
rs7834901	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7839055	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9643810	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9650144	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028036	chr8:47531749-48256108	Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv1015347	chr8:47698082-48318579	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv539593	chr8:47698082-48318579	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	esv3693377	chr8:47824261-48582964	Genic enhancers Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv491863	chr8:48053825-48586176	Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758155	chr8:48188989-48321308	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2759610	chr8:48188989-48321308	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv1817304	chr8:48205314-48321308	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:48207400-48258000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr8:48209400-48266000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:48228200-48254400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:48228200-48256000	Weak transcription	Left Ventricle	heart
5	chr8:48228600-48265800	Weak transcription	K562	blood
6	chr8:48230400-48256200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr8:48230400-48267400	Weak transcription	Spleen	Spleen
8	chr8:48230600-48252800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:48236400-48252800	Weak transcription	Pancreas	Pancrea
10	chr8:48237600-48256000	Weak transcription	Esophagus	oesophagus
11	chr8:48238800-48274600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:48239000-48255200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:48239000-48265800	Weak transcription	Aorta	Aorta
14	chr8:48239600-48254200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr8:48240600-48253400	Weak transcription	Placenta	Placenta
16	chr8:48244200-48255800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:48244200-48255800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:48244200-48256000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:48244200-48256000	Weak transcription	Fetal Lung	lung
20	chr8:48244200-48256200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr8:48245800-48254400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr8:48247800-48276400	Weak transcription	Colonic Mucosa	Colon
23	chr8:48248800-48309600	Weak transcription	Thymus	Thymus
24	chr8:48249200-48253000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:48249200-48253800	Weak transcription	Fetal Intestine Small	intestine
26	chr8:48249200-48254200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr8:48249200-48256000	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr8:48249200-48256000	Weak transcription	NHEK	skin
29	chr8:48249200-48265600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr8:48249200-48282000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr8:48249400-48254800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:48249600-48252800	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr8:48249600-48252800	Weak transcription	A549	lung
34	chr8:48249600-48255800	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr8:48249600-48256000	Weak transcription	Primary B cells from peripheral blood	blood
36	chr8:48249800-48252800	Weak transcription	Dnd41	blood
37	chr8:48249800-48254400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr8:48249800-48266000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr8:48249800-48267200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr8:48249800-48277400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr8:48249800-48277800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr8:48250000-48254200	Weak transcription	Primary B cells from cord blood	blood
43	chr8:48250000-48254400	Weak transcription	Ovary	ovary
44	chr8:48250000-48255800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr8:48250200-48252800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr8:48250200-48254000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr8:48250200-48256000	Weak transcription	Fetal Muscle Leg	muscle
48	chr8:48250200-48256000	Weak transcription	GM12878-XiMat	blood
49	chr8:48250800-48256000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr8:48251200-48254200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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