Variant report

Variant	rs10108796
Chromosome Location	chr8:50143460-50143461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:50142308..50144662-chr8:50148420..50150993,2	K562	blood:
2	chr8:50142308..50144994-chr8:50148031..50149920,2	K562	blood:
3	chr8:49890957..49892066-chr8:50142626..50143516,6	MCF-7	breast:
4	chr8:50141654..50144587-chr8:50158970..50161464,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10957379	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957380	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785478	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11987140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11992066	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12674890	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17665537	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1842401	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2170190	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4355782	0.84[EUR][1000 genomes]
rs55896231	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55904037	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56336550	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56368009	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58718013	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7013102	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72643127	0.84[EUR][1000 genomes]
rs72643128	0.84[EUR][1000 genomes]
rs72643129	0.84[EUR][1000 genomes]
rs72643150	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72643182	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72643185	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72643186	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72643199	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72644404	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72644405	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72644431	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72644448	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7830889	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1034908	chr8:50023423-50416049	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv539601	chr8:50023423-50416049	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1024410	chr8:50037085-50511501	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv428517	chr8:50094920-50232993	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv890855	chr8:50109365-50252962	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv890856	chr8:50133485-50272497	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv890857	chr8:50133485-50469764	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50139200-50159400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr8:50140000-50145000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:50141000-50143600	Enhancers	Stomach Mucosa	stomach
4	chr8:50141000-50143800	Enhancers	K562	blood
5	chr8:50142800-50143600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:50143200-50143800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:50143200-50144600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:50143400-50144000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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