Variant report

Variant	rs10108990
Chromosome Location	chr8:48665978-48665979
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10086266	0.80[AFR][1000 genomes]
rs10093950	0.85[AFR][1000 genomes]
rs10099656	0.85[AFR][1000 genomes]
rs10102782	0.85[AFR][1000 genomes]
rs10104074	0.89[AFR][1000 genomes]
rs10106803	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10110049	0.83[AFR][1000 genomes]
rs10111963	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11987727	0.85[AFR][1000 genomes]
rs11997023	0.98[AFR][1000 genomes]
rs28366397	0.85[AFR][1000 genomes]
rs28407704	0.82[AFR][1000 genomes]
rs28439682	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28583978	0.96[AFR][1000 genomes]
rs28603312	0.98[AFR][1000 genomes]
rs28683713	0.96[AFR][1000 genomes]
rs28701667	0.83[AFR][1000 genomes]
rs28812773	0.83[AFR][1000 genomes]
rs28895958	0.91[AFR][1000 genomes]
rs34142661	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6473874	0.87[AFR][1000 genomes]
rs6980675	0.98[AFR][1000 genomes]
rs6982040	0.93[AFR][1000 genomes]
rs6982203	0.83[AFR][1000 genomes]
rs6992748	1.00[AMR][1000 genomes]
rs7003614	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7010172	1.00[AFR][1000 genomes]
rs7014936	0.83[AFR][1000 genomes]
rs73677550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819424	0.87[AFR][1000 genomes]
rs7823419	0.85[AFR][1000 genomes]
rs7839604	0.83[AFR][1000 genomes]
rs8178117	0.87[AFR][1000 genomes]
rs8178176	0.85[AFR][1000 genomes]
rs8178185	0.87[AFR][1000 genomes]
rs8178240	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8178253	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803608	chr8:48506628-48874811	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1026287	chr8:48615720-48710849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv890849	chr8:48644337-48671294	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1016915	chr8:48653136-48710849	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv539597	chr8:48653136-48710849	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:48665200-48672800	Weak transcription	K562	blood
2	chr8:48665200-48676000	Weak transcription	A549	lung
3	chr8:48665400-48675800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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