Variant report

Variant	rs10111601
Chromosome Location	chr8:10851059-10851060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10086171	1.00[EUR][1000 genomes]
rs10090729	1.00[EUR][1000 genomes]
rs10092587	1.00[EUR][1000 genomes]
rs10092802	1.00[EUR][1000 genomes]
rs10093392	1.00[EUR][1000 genomes]
rs10096824	1.00[EUR][1000 genomes]
rs10102909	1.00[EUR][1000 genomes]
rs11250109	1.00[EUR][1000 genomes]
rs11994349	1.00[EUR][1000 genomes]
rs11997437	1.00[EUR][1000 genomes]
rs13439107	1.00[EUR][1000 genomes]
rs28654412	1.00[EUR][1000 genomes]
rs28693632	1.00[EUR][1000 genomes]
rs4452763	1.00[EUR][1000 genomes]
rs57240497	1.00[EUR][1000 genomes]
rs58810357	1.00[EUR][1000 genomes]
rs60363768	1.00[EUR][1000 genomes]
rs73539350	1.00[EUR][1000 genomes]
rs73539359	1.00[EUR][1000 genomes]
rs73539366	1.00[EUR][1000 genomes]
rs73539367	1.00[EUR][1000 genomes]
rs73539395	1.00[EUR][1000 genomes]
rs73541205	1.00[EUR][1000 genomes]
rs73541210	1.00[EUR][1000 genomes]
rs9657543	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10848600-10851200	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr8:10849600-10851200	Enhancers	Brain Angular Gyrus	brain
3	chr8:10849600-10851200	Enhancers	Brain Cingulate Gyrus	brain
4	chr8:10849800-10851200	Enhancers	Left Ventricle	heart
5	chr8:10850200-10851200	Bivalent Enhancer	Fetal Brain Male	brain
6	chr8:10850200-10851200	Enhancers	Right Atrium	heart
7	chr8:10850200-10851400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:10850400-10851400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr8:10850800-10851200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:10850800-10851200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
11	chr8:10850800-10851200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:10850800-10851200	Enhancers	Right Ventricle	heart
13	chr8:10850800-10852000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr8:10850800-10852000	Enhancers	Fetal Heart	heart
15	chr8:10851000-10851200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr8:10851000-10855600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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