Variant report

Variant	rs1011188
Chromosome Location	chr6:12812948-12812949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12802245..12807092-chr6:12811208..12815324,5	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10434855	0.91[EUR][1000 genomes]
rs10498681	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12525116	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12525210	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12526812	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12528247	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12528721	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12530470	0.89[CEU][hapmap]
rs1332842	0.80[EUR][1000 genomes]
rs1332851	0.89[CEU][hapmap]
rs1571996	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1572001	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873301	0.81[CEU][hapmap]
rs17616767	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17617491	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17678734	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17679286	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2015761	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2151221	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2876298	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs35278288	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4285318	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4293998	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4577783	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4583985	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4711817	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4711856	0.80[EUR][1000 genomes]
rs4714931	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs55764622	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55879442	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56244510	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56259669	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56270763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58666803	0.87[EUR][1000 genomes]
rs60954427	0.87[EUR][1000 genomes]
rs6911996	0.89[CEU][hapmap]
rs6915585	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs73722820	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73722822	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73722823	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73722845	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73722849	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768030	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9357486	0.89[CEU][hapmap]
rs9369607	0.91[EUR][1000 genomes]
rs9369612	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9381451	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9463091	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9463093	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9463105	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9463114	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9463117	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9463119	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9463140	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472484	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9472511	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472512	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472513	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472514	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472519	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9472520	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472528	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472549	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472566	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs950719	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12805800-12813800	Weak transcription	HSMMtube	muscle
2	chr6:12811000-12813800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:12811800-12814600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:12811800-12814800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:12811800-12815200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:12812200-12814000	Weak transcription	Fetal Brain Male	brain
7	chr6:12812200-12814600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:12812400-12813000	Weak transcription	Brain Germinal Matrix	brain
9	chr6:12812400-12813200	Enhancers	Dnd41	blood
10	chr6:12812800-12813000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr6:12812800-12814000	Enhancers	Primary hematopoietic stem cells	blood
12	chr6:12812800-12814600	Enhancers	HSMM	muscle

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