Variant report

Variant	rs10111917
Chromosome Location	chr8:10173455-10173456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10087391	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10089339	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10090440	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10097184	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112446	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10903321	1.00[CHB][hapmap]
rs11249975	1.00[ASN][1000 genomes]
rs11774220	1.00[CHB][hapmap]
rs11774276	1.00[ASN][1000 genomes]
rs11776035	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11776973	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11780122	1.00[CHB][hapmap]
rs11783705	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12156030	1.00[ASN][1000 genomes]
rs12156387	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13252589	1.00[CHB][hapmap]
rs13258409	1.00[ASN][1000 genomes]
rs13263482	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13263803	1.00[ASN][1000 genomes]
rs13272793	1.00[CHB][hapmap]
rs13275453	1.00[ASN][1000 genomes]
rs1484641	1.00[CHB][hapmap]
rs17151658	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17151667	1.00[CHB][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17151675	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17151684	1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17151697	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151699	1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151713	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151728	1.00[CHB][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17151741	1.00[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17151745	1.00[CHB][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17151748	1.00[CHB][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17151763	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17690549	1.00[CHB][hapmap]
rs17693945	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17694485	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17707665	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17707988	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17708090	1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17708114	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17746227	1.00[CHB][hapmap]
rs17746245	1.00[CHB][hapmap]
rs17747335	1.00[CHB][hapmap]
rs17750324	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17751178	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28507813	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28587507	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28611339	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28870492	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34487797	1.00[ASN][1000 genomes]
rs34919878	1.00[ASN][1000 genomes]
rs4240640	1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4394398	1.00[ASN][1000 genomes]
rs4840467	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4840476	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4841294	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4841295	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4841296	1.00[CHB][hapmap]
rs4841312	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4841356	1.00[CHB][hapmap]
rs55836840	0.81[EUR][1000 genomes]
rs55968335	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59119294	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66666973	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67773656	1.00[ASN][1000 genomes]
rs6985941	1.00[CHB][hapmap]
rs6994060	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997224	1.00[CHB][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7014570	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73193549	1.00[ASN][1000 genomes]
rs7822745	1.00[CHB][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7834714	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7835507	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835960	1.00[CHB][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7840347	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1028650	chr8:10101815-10178537	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv610264	chr8:10158428-10181176	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10151400-10177000	Weak transcription	Fetal Intestine Small	intestine
2	chr8:10151400-10178800	Weak transcription	Spleen	Spleen
3	chr8:10157200-10177600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:10158000-10177400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr8:10158600-10178200	Weak transcription	Brain Anterior Caudate	brain
6	chr8:10158800-10177600	Weak transcription	Primary B cells from cord blood	blood
7	chr8:10159000-10177400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr8:10161800-10177600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr8:10163800-10177200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:10163800-10177200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:10163800-10177800	Weak transcription	Primary T cells from cord blood	blood
12	chr8:10167200-10178800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:10167800-10177600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr8:10168200-10178800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr8:10168400-10178200	Weak transcription	Brain Hippocampus Middle	brain
16	chr8:10168400-10178200	Weak transcription	Brain Substantia Nigra	brain
17	chr8:10168400-10188600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr8:10169000-10183200	Weak transcription	Brain Angular Gyrus	brain
19	chr8:10169000-10183600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr8:10170800-10177400	Weak transcription	Gastric	stomach
21	chr8:10170800-10177400	Weak transcription	Left Ventricle	heart
22	chr8:10170800-10178200	Weak transcription	Brain Germinal Matrix	brain
23	chr8:10170800-10178800	Weak transcription	Pancreas	Pancrea
24	chr8:10170800-10178800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr8:10171000-10176600	Weak transcription	Liver	Liver
26	chr8:10171400-10177400	Weak transcription	Fetal Brain Female	brain
27	chr8:10172600-10174400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr8:10173200-10182200	Weak transcription	Fetal Brain Male	brain

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