Variant report

Variant	rs10112218
Chromosome Location	chr8:126160320-126160321
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126159214..126163322-chr8:126440490..126444259,4	MCF-7	breast:
2	chr8:126159964..126163627-chr8:126168529..126173031,5	MCF-7	breast:
3	chr8:126147030..126148722-chr8:126158702..126160766,2	K562	blood:
4	chr8:126160051..126162239-chr8:126445065..126446892,2	K562	blood:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10094316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986135	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12542820	0.82[CHB][hapmap]
rs12544146	0.88[YRI][hapmap]
rs2384859	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2891630	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4870935	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs5007394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470342	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470344	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6995096	1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs7000553	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7460712	0.88[YRI][hapmap]
rs7461756	0.80[CHB][hapmap]
rs7813225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817794	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7836427	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv917158	chr8:126101990-126255266	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
4	nsv1022954	chr8:126117811-126180331	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126117800-126160400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr8:126118000-126191800	Weak transcription	Thymus	Thymus
3	chr8:126137600-126213600	Weak transcription	Fetal Stomach	stomach
4	chr8:126138000-126163000	Weak transcription	Fetal Kidney	kidney
5	chr8:126138000-126163600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:126138000-126191000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr8:126138000-126197800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr8:126138200-126170400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:126138200-126200400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:126138400-126200200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr8:126140400-126162200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr8:126142600-126163000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr8:126142600-126231400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:126142800-126162000	Weak transcription	HSMM	muscle
15	chr8:126143000-126193200	Weak transcription	Left Ventricle	heart
16	chr8:126143200-126162200	Weak transcription	GM12878-XiMat	blood
17	chr8:126143200-126180600	Weak transcription	Fetal Muscle Leg	muscle
18	chr8:126143200-126186800	Weak transcription	Adipose Nuclei	Adipose
19	chr8:126143400-126162200	Weak transcription	HSMMtube	muscle
20	chr8:126143400-126163800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr8:126143800-126163800	Weak transcription	Fetal Lung	lung
22	chr8:126144400-126162000	Weak transcription	Hela-S3	cervix
23	chr8:126144600-126163800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr8:126144600-126168000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr8:126145000-126163000	Weak transcription	Dnd41	blood
26	chr8:126151600-126161800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:126154000-126175600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr8:126154200-126161200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:126154200-126163400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr8:126154400-126163400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr8:126154400-126166600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr8:126155400-126162200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr8:126155800-126175800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr8:126156200-126162200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr8:126156200-126162200	Weak transcription	Osteobl	bone
36	chr8:126156200-126163400	Weak transcription	NH-A	brain
37	chr8:126156600-126161600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr8:126156600-126162200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr8:126156600-126163800	Weak transcription	HMEC	breast
40	chr8:126156600-126180600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr8:126156600-126185400	Weak transcription	Lung	lung
42	chr8:126156600-126199800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr8:126156800-126162200	Weak transcription	Esophagus	oesophagus
44	chr8:126156800-126163400	Weak transcription	NHEK	skin
45	chr8:126156800-126163800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr8:126156800-126164000	Weak transcription	K562	blood
47	chr8:126156800-126172600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr8:126157000-126162800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr8:126157000-126163400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr8:126157000-126170400	Weak transcription	Fetal Thymus	thymus

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