Variant report

Variant	rs10112255
Chromosome Location	chr8:10823327-10823328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10087882	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10094007	1.00[CEU][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10094337	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10096634	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10098549	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs10102369	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10106574	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10107105	0.81[EUR][1000 genomes]
rs10107544	1.00[CEU][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes]
rs10111178	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10903334	0.88[AMR][1000 genomes]
rs11250100	1.00[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985330	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11990141	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11995188	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28491220	0.84[AFR][1000 genomes]
rs28546463	0.83[AMR][1000 genomes]
rs28712086	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57698321	0.88[AMR][1000 genomes]
rs73537380	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7816172	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv521721	chr8:10802102-10836472	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10822200-10823600	Enhancers	Fetal Brain Male	brain
2	chr8:10822400-10823600	Enhancers	Primary B cells from peripheral blood	blood
3	chr8:10822400-10823800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr8:10822400-10824000	Bivalent Enhancer	Fetal Muscle Leg	muscle
5	chr8:10822600-10823400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:10822600-10823600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr8:10822600-10823600	Enhancers	Brain Anterior Caudate	brain
8	chr8:10822600-10823800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:10822600-10823800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr8:10822800-10823400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr8:10822800-10823400	Bivalent Enhancer	Brain Hippocampus Middle	brain
12	chr8:10822800-10823600	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr8:10822800-10823800	Enhancers	GM12878-XiMat	blood
14	chr8:10823000-10823400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:10823000-10823400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr8:10823000-10823400	Enhancers	Brain Germinal Matrix	brain
17	chr8:10823000-10823400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr8:10823000-10823400	Flanking Active TSS	Fetal Brain Female	brain
19	chr8:10823000-10823600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
20	chr8:10823000-10823600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr8:10823200-10823600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr8:10823200-10824400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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