Variant report

Variant	rs10113735
Chromosome Location	chr8:10934049-10934050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10091993	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10099881	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105315	0.89[ASN][1000 genomes]
rs10108304	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11250114	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11250115	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11773990	0.84[ASN][1000 genomes]
rs11986748	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11991118	0.84[ASN][1000 genomes]
rs11991121	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12542383	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28510951	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28719598	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2898256	0.84[ASN][1000 genomes]
rs2898257	0.84[ASN][1000 genomes]
rs2898258	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898260	0.84[ASN][1000 genomes]
rs34094119	0.84[ASN][1000 genomes]
rs35167667	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4262293	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841489	0.84[ASN][1000 genomes]
rs55676920	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55813668	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59724806	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60134032	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66475020	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980856	0.84[ASN][1000 genomes]
rs6999969	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014291	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017567	0.84[ASN][1000 genomes]
rs7463505	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812573	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9329235	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10925000-10941800	Weak transcription	Right Atrium	heart
2	chr8:10925600-10935800	Weak transcription	Spleen	Spleen
3	chr8:10925600-10944400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:10930200-10936000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:10931600-10935200	Weak transcription	Brain Hippocampus Middle	brain
6	chr8:10931800-10935000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:10932000-10934600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:10932000-10934800	Weak transcription	Brain Anterior Caudate	brain
9	chr8:10932000-10934800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr8:10932000-10939800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:10932200-10934800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr8:10932200-10935000	Weak transcription	Brain Angular Gyrus	brain
13	chr8:10932200-10935000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr8:10932200-10935000	Weak transcription	Brain Substantia Nigra	brain
15	chr8:10932200-10936400	Weak transcription	HMEC	breast
16	chr8:10932400-10935200	Weak transcription	Brain Germinal Matrix	brain
17	chr8:10932600-10934200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr8:10932800-10934800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links