Variant report

Variant	rs10114981
Chromosome Location	chr9:71171025-71171026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10117398	1.00[AMR][1000 genomes]
rs10120745	1.00[AMR][1000 genomes]
rs10123762	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10123848	0.81[AFR][1000 genomes]
rs10123970	1.00[AMR][1000 genomes]
rs10124105	1.00[AMR][1000 genomes]
rs10869040	0.97[AFR][1000 genomes]
rs11141210	1.00[AMR][1000 genomes]
rs12335607	1.00[AMR][1000 genomes]
rs12341862	1.00[AMR][1000 genomes]
rs12342668	0.97[AFR][1000 genomes]
rs12343790	1.00[AMR][1000 genomes]
rs12346301	1.00[AMR][1000 genomes]
rs12348463	1.00[AMR][1000 genomes]
rs12349403	1.00[AMR][1000 genomes]
rs12351373	1.00[AMR][1000 genomes]
rs187844	1.00[AMR][1000 genomes]
rs1928255	1.00[AMR][1000 genomes]
rs28373225	1.00[AMR][1000 genomes]
rs28515496	1.00[AMR][1000 genomes]
rs28539619	1.00[AMR][1000 genomes]
rs28540360	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28685588	1.00[AMR][1000 genomes]
rs60797267	1.00[AMR][1000 genomes]
rs7036790	1.00[AMR][1000 genomes]
rs73449507	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893413	chr9:71130848-71196984	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893411	chr9:71130848-71199545	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv893412	chr9:71130848-71199545	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1024967	chr9:71130848-71210031	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv482506	chr9:71130848-71280888	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv466392	chr9:71130848-71318817	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv614546	chr9:71130848-71318817	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1026962	chr9:71130848-71357605	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	nsv893414	chr9:71139378-71320732	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71162200-71174800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr9:71162200-71175000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:71166600-71173600	Weak transcription	Left Ventricle	heart
4	chr9:71166600-71173600	Weak transcription	Right Atrium	heart
5	chr9:71167400-71171200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:71167800-71173000	Weak transcription	Fetal Heart	heart
7	chr9:71168000-71173000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr9:71169400-71174400	Weak transcription	Stomach Mucosa	stomach
9	chr9:71169600-71173800	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:71169600-71174800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:71169600-71175000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:71170000-71175000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:71170200-71171200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:71170200-71172600	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr9:71170200-71173200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr9:71170200-71174800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr9:71170400-71171200	Enhancers	Fetal Kidney	kidney
18	chr9:71170400-71171400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:71170400-71175200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:71170600-71171200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:71170600-71171200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
22	chr9:71170600-71171200	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr9:71170800-71171200	Weak transcription	Primary B cells from cord blood	blood
24	chr9:71170800-71171200	Enhancers	Primary hematopoietic stem cells	blood
25	chr9:71170800-71172800	Weak transcription	Right Ventricle	heart
26	chr9:71171000-71171200	Enhancers	Spleen	Spleen
27	chr9:71171000-71175000	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links