Variant report

Variant	rs10116566
Chromosome Location	chr9:116664845-116664846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116663867..116665785-chr9:116668142..116670914,2	K562	blood:
2	chr9:116658311..116661574-chr9:116662658..116666570,4	K562	blood:
3	chr9:116660624..116662280-chr9:116663059..116664956,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10114173	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10123606	0.85[ASN][1000 genomes]
rs10513222	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs10817532	0.81[YRI][hapmap]
rs10982000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12378378	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2150014	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs2900569	0.81[YRI][hapmap]
rs35189176	0.82[ASN][1000 genomes]
rs7026176	0.87[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7034929	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7040839	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7861276	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116649800-116668600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:116651000-116668000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:116651200-116675000	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:116652200-116668400	Weak transcription	NH-A	brain
5	chr9:116653200-116668400	Weak transcription	NHLF	lung
6	chr9:116653200-116669600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:116653200-116671800	Weak transcription	Fetal Lung	lung
8	chr9:116653400-116669000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:116653800-116665400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:116653800-116669000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:116653800-116674000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:116654400-116665400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:116654400-116668200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:116658000-116668400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:116659400-116685400	Weak transcription	A549	lung
16	chr9:116660400-116668000	Weak transcription	HMEC	breast
17	chr9:116660600-116668400	Weak transcription	HUVEC	blood vessel
18	chr9:116661800-116668000	Weak transcription	Pancreas	Pancrea
19	chr9:116661800-116669200	Weak transcription	Lung	lung
20	chr9:116662000-116671400	Weak transcription	Right Ventricle	heart
21	chr9:116662400-116665400	Weak transcription	Adipose Nuclei	Adipose
22	chr9:116663400-116667400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:116664000-116668600	Weak transcription	HSMM	muscle
24	chr9:116664000-116669000	Weak transcription	Aorta	Aorta
25	chr9:116664000-116669000	Weak transcription	Gastric	stomach
26	chr9:116664000-116669600	Weak transcription	Fetal Intestine Small	intestine
27	chr9:116664000-116674400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:116664200-116666200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
29	chr9:116664200-116667000	Weak transcription	Psoas Muscle	Psoas
30	chr9:116664200-116668600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr9:116664200-116669400	Weak transcription	Ovary	ovary
32	chr9:116664400-116665600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:116664400-116665800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr9:116664400-116668400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr9:116664400-116668400	Weak transcription	NHDF-Ad	bronchial
36	chr9:116664400-116668600	Weak transcription	HSMMtube	muscle
37	chr9:116664400-116669000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr9:116664400-116669000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr9:116664400-116669200	Weak transcription	Fetal Stomach	stomach
40	chr9:116664400-116669400	Weak transcription	Spleen	Spleen
41	chr9:116664400-116669600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr9:116664400-116669600	Weak transcription	Fetal Muscle Trunk	muscle
43	chr9:116664600-116665000	Weak transcription	Fetal Muscle Leg	muscle

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