Variant report

Variant	rs10116973
Chromosome Location	chr9:503957-503958
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr9:503808-504755	ECC-1	luminal epithelium:	n/a	n/a
2	POLR2A	chr9:503931-504926	A549	lung:	n/a	n/a
3	RCOR1	chr9:503937-504912	K562	blood:	n/a	n/a
4	ZNF263	chr9:503512-504620	K562	blood:	n/a	n/a
5	ZNF143	chr9:503955-504395	H1-hESC	embryonic stem cell:	n/a	n/a
6	E2F4	chr9:503864-504993	MCF10A-Er-Src	breast:	n/a	chr9:504408-504417 chr9:504611-504621 chr9:504837-504847 chr9:504857-504868 chr9:504904-504914 chr9:504601-504613 chr9:504857-504867
7	MAX	chr9:503766-504905	MCF-7	breast:	n/a	chr9:504020-504030
8	MAX	chr9:503922-504911	K562	blood:	n/a	chr9:504020-504030
9	E2F6	chr9:503686-504743	H1-hESC	embryonic stem cell:	n/a	chr9:504408-504417 chr9:504611-504621 chr9:504601-504613
10	POLR2A	chr9:503872-505094	A549	lung:	n/a	n/a
11	HA-E2F1	chr9:503865-505210	MCF-7	breast:	n/a	chr9:505004-505014 chr9:504408-504417 chr9:504611-504621 chr9:504837-504847 chr9:505005-505016 chr9:505004-505015 chr9:504857-504868 chr9:505005-505013 chr9:504904-504914 chr9:504601-504613 chr9:505112-505122 chr9:505005-505012 chr9:504857-504867 chr9:505005-505013
12	SIN3A	chr9:503918-505882	H1-hESC	embryonic stem cell:	n/a	chr9:505204-505217 chr9:504950-504963 chr9:504430-504443 chr9:505011-505022
13	GTF2F1	chr9:503848-504358	H1-hESC	embryonic stem cell:	n/a	n/a
14	MAX	chr9:503775-504762	H1-hESC	embryonic stem cell:	n/a	chr9:504020-504030
15	CTCF	chr9:503215-505107	A549	lung:	n/a	chr9:504426-504439 chr9:504065-504073 chr9:504969-504985 chr9:504060-504073
16	TFAP2C	chr9:503617-505336	Hela-S3	cervix:	n/a	n/a
17	SMC3	chr9:503898-504793	Hela-S3	cervix:	n/a	chr9:504669-504679
18	RCOR1	chr9:503899-504688	Hela-S3	cervix:	n/a	n/a
19	BCL3	chr9:503842-504488	A549	lung:	n/a	chr9:504175-504184 chr9:504327-504340 chr9:504456-504469
20	POLR2A	chr9:503851-505713	A549	lung:	n/a	n/a
21	POLR2A	chr9:503934-505046	MCF-7	breast:	n/a	n/a
22	TCF12	chr9:503902-504881	ECC-1	luminal epithelium:	n/a	n/a
23	MAFK	chr9:503911-504229	Hela-S3	cervix:	n/a	n/a
24	MAX	chr9:503769-505185	A549	lung:	n/a	chr9:504020-504030 chr9:504959-504969
25	ZNF263	chr9:503342-505201	HEK293-T-REx	kidney:	n/a	n/a
26	MAX	chr9:503755-504908	HepG2	liver:	n/a	chr9:504020-504030
27	MAFK	chr9:503879-504132	H1-hESC	embryonic stem cell:	n/a	n/a
28	ZKSCAN1	chr9:503816-503970	Hela-S3	cervix:	n/a	n/a
29	TCF12	chr9:503856-504646	A549	lung:	n/a	n/a
30	E2F6	chr9:503803-505254	H1-hESC	embryonic stem cell:	n/a	chr9:505004-505014 chr9:504408-504417 chr9:504611-504621 chr9:504837-504847 chr9:505005-505016 chr9:505004-505015 chr9:504857-504868 chr9:505005-505013 chr9:504904-504914 chr9:504601-504613 chr9:505112-505122 chr9:505005-505012 chr9:504857-504867 chr9:505005-505013
31	CTBP2	chr9:503852-505238	H1-hESC	embryonic stem cell:	n/a	n/a
32	MAX	chr9:503954-504794	NB4	blood:	n/a	chr9:504020-504030
33	MAX	chr9:503894-505049	Hela-S3	cervix:	n/a	chr9:504020-504030 chr9:504959-504969
34	KAP1	chr9:503738-504545	HEK293	kidney:	n/a	n/a
35	POLR2A	chr9:503836-505312	H1-hESC	embryonic stem cell:	n/a	n/a
36	POLR2A	chr9:503539-504973	Raji	blood:	n/a	n/a
37	MAX	chr9:503682-504488	H1-hESC	embryonic stem cell:	n/a	chr9:504020-504030
38	MAX	chr9:503795-505521	ECC-1	luminal epithelium:	n/a	chr9:504020-504030 chr9:504959-504969 chr9:505361-505370
39	TBP	chr9:503804-504753	H1-hESC	embryonic stem cell:	n/a	n/a
40	BHLHE40	chr9:503924-504891	K562	blood:	n/a	chr9:504430-504446 chr9:504607-504623 chr9:504604-504620 chr9:504606-504622
41	E2F6	chr9:503724-504830	A549	lung:	n/a	chr9:504408-504417 chr9:504611-504621 chr9:504601-504613
42	MAX	chr9:503352-506055	A549	lung:	n/a	chr9:504020-504030 chr9:505706-505716 chr9:505706-505715 chr9:505707-505714 chr9:504959-504969 chr9:505361-505370 chr9:505706-505715
43	E2F6	chr9:503794-504861	A549	lung:	n/a	chr9:504408-504417 chr9:504611-504621 chr9:504837-504847 chr9:504601-504613
44	UBTF	chr9:503870-504943	K562	blood:	n/a	n/a
45	E2F6	chr9:503855-505174	K562	blood:	n/a	chr9:505004-505014 chr9:504408-504417 chr9:504611-504621 chr9:504837-504847 chr9:505005-505016 chr9:505004-505015 chr9:504857-504868 chr9:505005-505013 chr9:504904-504914 chr9:504601-504613 chr9:505112-505122 chr9:505005-505012 chr9:504857-504867 chr9:505005-505013
46	MAX	chr9:503810-505963	H1-hESC	embryonic stem cell:	n/a	chr9:504020-504030 chr9:505706-505716 chr9:505706-505715 chr9:505707-505714 chr9:504959-504969 chr9:505361-505370 chr9:505706-505715
47	MAX	chr9:503888-505332	HCT-116	colon:	n/a	chr9:504020-504030 chr9:504959-504969
48	MAX	chr9:503719-505244	ECC-1	luminal epithelium:	n/a	chr9:504020-504030 chr9:504959-504969
49	MAX	chr9:503871-504995	K562	blood:	n/a	chr9:504020-504030 chr9:504959-504969
50	BACH1	chr9:503882-504954	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:503937-503987	NT2-D1	testis:	n/a
2	chr9:503937-503987	HCF	heart:	n/a
3	chr9:503937-503987	AG04449	skin:	fetal
4	chr9:503937-503987	GM06990	blood:	n/a
5	chr9:503937-503987	HL-60	blood:	n/a
6	chr9:503937-503987	HNPCEpiC	eye:	n/a
7	chr9:503937-503987	SK-N-MC	brain:	n/a
8	chr9:503937-503987	ProgFib	skin:	n/a
9	chr9:503937-503987	GM19239	blood:	n/a
10	chr9:503937-503987	U87	brain:	n/a
11	chr9:503937-503987	LNCaP	prostate:	n/a
12	chr9:503937-503987	HEK293	kidney:	embryo
13	chr9:503937-503987	GM12891	blood:	n/a
14	chr9:503937-503987	ECC-1	luminal epithelium:	n/a
15	chr9:503937-503987	PANC-1	pancreas:	n/a
16	chr9:503937-503987	NHBE	bronchial:	n/a
17	chr9:503937-503987	CMK	blood:	n/a
18	chr9:503937-503987	SK-N-SH_RA	brain:	n/a
19	chr9:503937-503987	Hela-S3	cervix:	n/a
20	chr9:503937-503987	MCF10A-Er-Src	breast:	n/a
21	chr9:503937-503987	MCF-7	breast:	n/a
22	chr9:503937-503987	HAEpiC	amniotic membrane:	n/a
23	chr9:503937-503987	GM12878	blood:	n/a
24	chr9:503937-503987	AG09319	gingival:	n/a
25	chr9:503937-503987	HRPEpiC	eye:	n/a
26	chr9:503937-503987	SKMC	muscle:	n/a
27	chr9:503937-503987	Jurkat	blood:	n/a
28	chr9:503937-503987	HUVEC	blood vessel:	n/a
29	chr9:503937-503987	NB4	blood:	n/a
30	chr9:503937-503987	HPAEpiC	pulmonary alveolar:	n/a
31	chr9:503937-503987	HCT-116	colon:	n/a
32	chr9:503937-503987	HRE	kidney:	n/a
33	chr9:503937-503987	BE2_C	brain:	n/a
34	chr9:503937-503987	AG04450	lung:	fetal
35	chr9:503937-503987	ovcar-3	ovarian:	n/a
36	chr9:503937-503987	T-47D	breast:	n/a
37	chr9:503937-503987	K562	blood:	n/a
38	chr9:503937-503987	H1-hESC	embryonic stem cell:	embryo
39	chr9:503937-503987	AG09309	skin:	n/a
40	chr9:503937-503987	NHDF-neo	bronchial:	n/a
41	chr9:503937-503987	HMEC	breast:	n/a
42	chr9:503937-503987	AoSMC	blood vessel:	n/a
43	chr9:503937-503987	Hepatocyte	liver:	n/a
44	chr9:503937-503987	NH-A	brain:	n/a
45	chr9:503937-503987	GM12892	blood:	n/a
46	chr9:503937-503987	HEEpiC	esophagus:	n/a
47	chr9:503937-503987	BJ	skin:	n/a
48	chr9:503937-503987	A549	lung:	n/a
49	chr9:503937-503987	HepG2	liver:	n/a
50	chr9:503937-503987	SK-N-SH	brain:	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:494848..496689-chr9:501659..504144,2	MCF-7	breast:
2	chr9:490052..492255-chr9:502875..504712,2	MCF-7	breast:
3	chr9:468830..470676-chr9:503247..506779,4	MCF-7	breast:
4	chr9:468995..471572-chr9:503851..506185,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf66-7	chr9:503057-504746	NONHSAT129929

Variant related genes	Relation type
KANK1	TF binding region
KANK1	CpG island
ENSG00000227155	Chromatin interaction
ENSG00000107104	Chromatin interaction

Extended variants
information (count: 165 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10118798	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10815100	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10815118	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10815120	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10815127	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10815128	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10974840	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10974841	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10974842	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10974844	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10974855	0.88[EUR][1000 genomes]
rs10974864	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10974872	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10974881	0.95[EUR][1000 genomes]
rs10974929	0.93[EUR][1000 genomes]
rs10974930	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10974931	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10974932	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12002163	0.98[EUR][1000 genomes]
rs12002448	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12335596	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12335637	0.88[EUR][1000 genomes]
rs12335857	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12335985	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12339230	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12339635	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12340945	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12342157	1.00[ASN][1000 genomes]
rs12342353	0.95[EUR][1000 genomes]
rs12342407	0.83[EUR][1000 genomes]
rs12344733	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345050	0.95[EUR][1000 genomes]
rs12345253	0.95[EUR][1000 genomes]
rs12347628	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12347670	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12347751	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352750	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352940	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12353166	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410966	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410967	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410968	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2885067	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34739276	1.00[ASN][1000 genomes]
rs4548235	0.95[EUR][1000 genomes]
rs55877464	0.98[EUR][1000 genomes]
rs56072524	1.00[ASN][1000 genomes]
rs56126601	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58134599	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58370292	0.93[EUR][1000 genomes]
rs58598003	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58920137	0.95[EUR][1000 genomes]
rs60064943	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60919895	1.00[ASN][1000 genomes]
rs62529929	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62531460	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62531463	0.91[EUR][1000 genomes]
rs6476918	1.00[ASN][1000 genomes]
rs7036591	0.88[EUR][1000 genomes]
rs7047249	1.00[ASN][1000 genomes]
rs73639561	0.91[EUR][1000 genomes]
rs7846750	0.98[EUR][1000 genomes]
rs7848411	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7849531	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850663	0.95[EUR][1000 genomes]
rs7850873	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7852911	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854730	1.00[ASN][1000 genomes]
rs7857770	0.95[EUR][1000 genomes]
rs7858791	0.88[EUR][1000 genomes]
rs7859991	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862276	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874553	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:92 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2764172	chr9:40910-593899	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv949051	chr9:40910-925305	Bivalent Enhancer Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1018439	chr9:46587-518103	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv469507	chr9:199707-544450	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv492004	chr9:204090-639077	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1031205	chr9:209254-518295	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv539827	chr9:209254-518295	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1015338	chr9:209254-808057	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv1034557	chr9:209254-964422	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv539828	chr9:209254-964422	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv1016963	chr9:214166-789985	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv539843	chr9:214166-789985	Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
14	nsv1018146	chr9:214366-522996	Active TSS Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	nsv539859	chr9:214366-522996	Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
16	nsv1031297	chr9:214366-659340	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
17	nsv539860	chr9:214366-659340	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
18	nsv539861	chr9:214366-805666	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
19	nsv1035041	chr9:222282-654518	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
20	nsv539877	chr9:222282-654518	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
21	nsv1018491	chr9:222282-715668	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
22	nsv539878	chr9:222282-715668	Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
23	nsv1018835	chr9:236075-526981	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
24	nsv612997	chr9:238389-510546	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
25	nsv466044	chr9:238389-634160	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
26	nsv533086	chr9:280255-753314	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
27	nsv612999	chr9:290670-526772	Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
28	nsv1019991	chr9:295237-533926	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
29	nsv429976	chr9:302324-678088	Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
30	nsv1016589	chr9:304385-730233	Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
31	nsv539886	chr9:304385-730233	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
32	nsv533964	chr9:314969-910448	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
33	nsv1022401	chr9:319961-518103	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
34	nsv1027265	chr9:325712-517545	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
35	nsv539888	chr9:325712-517545	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
36	nsv1017197	chr9:325877-519256	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
37	nsv1029858	chr9:327139-518295	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
38	nsv1028102	chr9:327139-605908	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
39	nsv1031809	chr9:327139-715668	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
40	nsv613011	chr9:333819-635677	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
41	nsv466045	chr9:334337-543631	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
42	nsv613012	chr9:334337-543631	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
43	nsv1026342	chr9:336026-544519	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
44	nsv1017374	chr9:343870-534149	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
45	nsv539889	chr9:343870-534149	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
46	nsv466046	chr9:344229-543631	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
47	nsv613013	chr9:344229-543631	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
48	nsv931598	chr9:349034-862771	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
49	nsv1027367	chr9:366387-697983	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
50	nsv1027550	chr9:366387-715668	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:503000-504200	Flanking Active TSS	Fetal Heart	heart
2	chr9:503200-504000	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
3	chr9:503200-504200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr9:503200-504200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr9:503200-504200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:503200-504200	Flanking Active TSS	Colonic Mucosa	Colon
7	chr9:503200-504400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
8	chr9:503400-504000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
9	chr9:503400-504000	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:503400-504000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
11	chr9:503400-504000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
12	chr9:503400-504000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
13	chr9:503400-504000	Bivalent Enhancer	Fetal Lung	lung
14	chr9:503400-504000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
15	chr9:503400-504000	Flanking Active TSS	A549	lung
16	chr9:503400-504200	Flanking Bivalent TSS/Enh	Placenta	Placenta
17	chr9:503400-504200	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr9:503400-504200	Flanking Active TSS	Hela-S3	cervix
19	chr9:503400-504400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
20	chr9:503400-504400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr9:503400-504400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:503400-504400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
23	chr9:503400-504400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr9:503400-505400	Active TSS	Brain Anterior Caudate	brain
25	chr9:503400-505800	Active TSS	Esophagus	oesophagus
26	chr9:503400-506000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr9:503600-504000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr9:503600-504000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
29	chr9:503600-504000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr9:503600-504000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
31	chr9:503600-504000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
32	chr9:503600-504000	Flanking Active TSS	Colon Smooth Muscle	Colon
33	chr9:503600-504000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
34	chr9:503600-504000	Active TSS	Fetal Intestine Small	intestine
35	chr9:503600-504000	Active TSS	Sigmoid Colon	Sigmoid Colon
36	chr9:503600-504000	Enhancers	Small Intestine	intestine
37	chr9:503600-504200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:503600-504200	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
39	chr9:503600-504200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
40	chr9:503600-504200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr9:503600-504200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
42	chr9:503600-504200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
43	chr9:503600-504200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr9:503600-504200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr9:503600-504200	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
46	chr9:503600-504200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
47	chr9:503600-504200	Flanking Active TSS	K562	blood
48	chr9:503600-504400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
49	chr9:503600-504400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr9:503600-504400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain

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