Variant report

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:110517673..110519483-chr9:110556820..110559158,2	MCF-7	breast:
2	chr9:110519104..110521898-chr9:110561118..110562716,2	MCF-7	breast:
3	chr9:110518035..110520243-chr9:110894360..110896774,2	MCF-7	breast:
4	chr9:110517453..110520305-chr9:110540902..110543494,2	MCF-7	breast:
5	chr9:110500818..110503086-chr9:110517383..110519685,3	MCF-7	breast:
6	chr9:110250411..110253754-chr9:110517545..110522378,7	MCF-7	breast:
7	chr9:110517822..110519331-chr9:110545952..110548715,2	MCF-7	breast:
8	chr9:110517869..110520249-chr9:110520374..110523594,3	MCF-7	breast:
9	chr9:110246450..110254025-chr9:110510483..110522079,28	MCF-7	breast:
10	chr9:110241813..110245896-chr9:110516233..110519941,6	MCF-7	breast:
11	chr9:110514110..110515685-chr9:110517940..110519497,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10115530	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10118587	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12337757	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12338011	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12338114	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12339291	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12343121	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12347133	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12348910	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12348975	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1330149	0.80[AFR][1000 genomes]
rs1467311	0.83[AFR][1000 genomes]
rs17625771	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1831382	0.91[AFR][1000 genomes]
rs2140480	0.93[AFR][1000 genomes]
rs28376933	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28399092	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28784969	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4979370	0.80[AFR][1000 genomes]
rs57874597	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv508561	chr9:110506336-110545367	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110512400-110520000	Weak transcription	Psoas Muscle	Psoas
2	chr9:110514600-110523200	Weak transcription	K562	blood
3	chr9:110514800-110522600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr9:110515400-110523000	Weak transcription	Left Ventricle	heart
5	chr9:110517000-110519600	Enhancers	Placenta	Placenta
6	chr9:110517800-110523000	Weak transcription	Small Intestine	intestine
7	chr9:110518000-110523600	Weak transcription	Adipose Nuclei	Adipose
8	chr9:110518200-110522200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr9:110518200-110523000	Weak transcription	Stomach Mucosa	stomach
10	chr9:110518200-110544600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:110518400-110519400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr9:110518400-110519400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr9:110518400-110521800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr9:110518400-110522600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:110518400-110522800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:110518400-110523000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr9:110518800-110521200	Weak transcription	Spleen	Spleen

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