Variant report

Variant	rs10118587
Chromosome Location	chr9:110545957-110545958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110517822..110519331-chr9:110545952..110548715,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10117695	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10759258	0.84[AFR][1000 genomes]
rs10979040	1.00[CHB][hapmap]
rs12337757	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12339291	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12343121	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12347133	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12348910	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12348975	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1330149	0.91[AFR][1000 genomes]
rs1411357	0.81[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1467311	1.00[LWK][hapmap]
rs17625771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1831382	0.80[AFR][1000 genomes]
rs2140480	0.82[AFR][1000 genomes]
rs28376933	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28399092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28784969	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4979370	1.00[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs57874597	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110536600-110546600	Weak transcription	Spleen	Spleen
2	chr9:110541400-110547400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:110542000-110547400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr9:110543600-110547800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:110544200-110546000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:110544200-110548000	Enhancers	Fetal Muscle Leg	muscle
7	chr9:110544200-110549200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:110544600-110546000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr9:110544600-110546200	Enhancers	K562	blood
10	chr9:110544800-110546000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:110544800-110547800	Enhancers	Fetal Intestine Large	intestine
12	chr9:110544800-110549200	Enhancers	Placenta	Placenta
13	chr9:110545000-110546600	Weak transcription	Left Ventricle	heart
14	chr9:110545200-110546400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr9:110545200-110546400	Weak transcription	Osteobl	bone
16	chr9:110545200-110546600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:110545200-110546600	Weak transcription	HSMM	muscle
18	chr9:110545200-110546600	Weak transcription	HSMMtube	muscle
19	chr9:110545200-110547400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr9:110545400-110546400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:110545400-110546600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:110545800-110546200	Weak transcription	NHDF-Ad	bronchial
23	chr9:110545800-110546800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:110545800-110547000	Weak transcription	Primary hematopoietic stem cells	blood

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