Variant report

Variant	rs10119358
Chromosome Location	chr9:503735-503736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr9:503512-504620	K562	blood:	n/a	n/a
2	E2F6	chr9:503686-504743	H1-hESC	embryonic stem cell:	n/a	chr9:504408-504417 chr9:504611-504621 chr9:504601-504613
3	CTCF	chr9:503215-505107	A549	lung:	n/a	chr9:504426-504439 chr9:504065-504073 chr9:504969-504985 chr9:504060-504073
4	TFAP2C	chr9:503617-505336	Hela-S3	cervix:	n/a	n/a
5	ZNF263	chr9:503342-505201	HEK293-T-REx	kidney:	n/a	n/a
6	POLR2A	chr9:503539-504973	Raji	blood:	n/a	n/a
7	MAX	chr9:503682-504488	H1-hESC	embryonic stem cell:	n/a	chr9:504020-504030
8	E2F6	chr9:503724-504830	A549	lung:	n/a	chr9:504408-504417 chr9:504611-504621 chr9:504601-504613
9	MAX	chr9:503352-506055	A549	lung:	n/a	chr9:504020-504030 chr9:505706-505716 chr9:505706-505715 chr9:505707-505714 chr9:504959-504969 chr9:505361-505370 chr9:505706-505715
10	MXI1	chr9:503679-503845	Hela-S3	cervix:	n/a	n/a
11	MAX	chr9:503719-505244	ECC-1	luminal epithelium:	n/a	chr9:504020-504030 chr9:504959-504969
12	SP4	chr9:503713-503976	H1-hESC	embryonic stem cell:	n/a	n/a
13	STAT3	chr9:503594-503794	MCF10A-Er-Src	breast:	n/a	chr9:503686-503694

No.	Distal block	Cell Line	Cell type
1	chr9:494848..496689-chr9:501659..504144,2	MCF-7	breast:
2	chr9:490052..492255-chr9:502875..504712,2	MCF-7	breast:
3	chr9:468830..470676-chr9:503247..506779,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf66-7	chr9:503057-504746	NONHSAT129929

Variant related genes	Relation type
KANK1	TF binding region
ENSG00000227155	Chromatin interaction
ENSG00000107104	Chromatin interaction

Extended variants
information (count: 154 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1007886	1.00[EUR][1000 genomes]
rs10118662	1.00[EUR][1000 genomes]
rs10119849	0.89[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10120652	1.00[EUR][1000 genomes]
rs10120656	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10120682	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10122300	1.00[EUR][1000 genomes]
rs10124264	1.00[EUR][1000 genomes]
rs10124549	1.00[EUR][1000 genomes]
rs10124592	1.00[EUR][1000 genomes]
rs10124715	1.00[EUR][1000 genomes]
rs10125427	1.00[EUR][1000 genomes]
rs10125751	1.00[EUR][1000 genomes]
rs10491597	1.00[EUR][1000 genomes]
rs10491601	1.00[EUR][1000 genomes]
rs10974353	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs10974856	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12336145	1.00[EUR][1000 genomes]
rs12339824	1.00[EUR][1000 genomes]
rs12339829	1.00[EUR][1000 genomes]
rs12346203	1.00[EUR][1000 genomes]
rs12346241	1.00[EUR][1000 genomes]
rs12349443	1.00[EUR][1000 genomes]
rs12351491	1.00[EUR][1000 genomes]
rs16919428	1.00[EUR][1000 genomes]
rs16919558	1.00[EUR][1000 genomes]
rs16919987	1.00[EUR][1000 genomes]
rs16920060	1.00[EUR][1000 genomes]
rs16920514	1.00[EUR][1000 genomes]
rs16921050	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16921122	1.00[EUR][1000 genomes]
rs16935976	1.00[EUR][1000 genomes]
rs2068736	1.00[EUR][1000 genomes]
rs2131778	1.00[EUR][1000 genomes]
rs57352040	1.00[EUR][1000 genomes]
rs58526978	1.00[EUR][1000 genomes]
rs58702657	1.00[EUR][1000 genomes]
rs59057540	1.00[EUR][1000 genomes]
rs59363005	1.00[EUR][1000 genomes]
rs60196038	1.00[EUR][1000 genomes]
rs60638356	1.00[EUR][1000 genomes]
rs61591244	1.00[EUR][1000 genomes]
rs6476809	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7026359	1.00[EUR][1000 genomes]
rs7026360	1.00[EUR][1000 genomes]
rs7026381	1.00[EUR][1000 genomes]
rs7030137	1.00[EUR][1000 genomes]
rs7038982	1.00[EUR][1000 genomes]
rs72689695	1.00[EUR][1000 genomes]
rs72705656	1.00[EUR][1000 genomes]
rs73371010	1.00[EUR][1000 genomes]
rs73371044	1.00[EUR][1000 genomes]
rs73371075	1.00[EUR][1000 genomes]
rs73373075	1.00[EUR][1000 genomes]
rs73373081	1.00[EUR][1000 genomes]
rs73376916	1.00[EUR][1000 genomes]
rs73376918	1.00[EUR][1000 genomes]
rs73376921	1.00[EUR][1000 genomes]
rs73639346	1.00[EUR][1000 genomes]
rs7858168	1.00[EUR][1000 genomes]
rs7872247	1.00[EUR][1000 genomes]
rs7873666	1.00[EUR][1000 genomes]
rs876577	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:91 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2764172	chr9:40910-593899	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv949051	chr9:40910-925305	Bivalent Enhancer Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1018439	chr9:46587-518103	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv469507	chr9:199707-544450	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv492004	chr9:204090-639077	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1031205	chr9:209254-518295	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv539827	chr9:209254-518295	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1015338	chr9:209254-808057	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv1034557	chr9:209254-964422	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv539828	chr9:209254-964422	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv1016963	chr9:214166-789985	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv539843	chr9:214166-789985	Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
14	nsv1018146	chr9:214366-522996	Active TSS Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	nsv539859	chr9:214366-522996	Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
16	nsv1031297	chr9:214366-659340	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
17	nsv539860	chr9:214366-659340	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
18	nsv539861	chr9:214366-805666	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
19	nsv1035041	chr9:222282-654518	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
20	nsv539877	chr9:222282-654518	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
21	nsv1018491	chr9:222282-715668	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
22	nsv539878	chr9:222282-715668	Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
23	nsv1018835	chr9:236075-526981	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
24	nsv612997	chr9:238389-510546	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
25	nsv466044	chr9:238389-634160	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
26	nsv533086	chr9:280255-753314	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
27	nsv612999	chr9:290670-526772	Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
28	nsv1019991	chr9:295237-533926	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
29	nsv429976	chr9:302324-678088	Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
30	nsv1016589	chr9:304385-730233	Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
31	nsv539886	chr9:304385-730233	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
32	nsv533964	chr9:314969-910448	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
33	nsv1022401	chr9:319961-518103	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
34	nsv1027265	chr9:325712-517545	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
35	nsv539888	chr9:325712-517545	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
36	nsv1017197	chr9:325877-519256	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
37	nsv1029858	chr9:327139-518295	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
38	nsv1028102	chr9:327139-605908	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
39	nsv1031809	chr9:327139-715668	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
40	nsv613011	chr9:333819-635677	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
41	nsv466045	chr9:334337-543631	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
42	nsv613012	chr9:334337-543631	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
43	nsv1026342	chr9:336026-544519	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
44	nsv1017374	chr9:343870-534149	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
45	nsv539889	chr9:343870-534149	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
46	nsv466046	chr9:344229-543631	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
47	nsv613013	chr9:344229-543631	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
48	nsv931598	chr9:349034-862771	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
49	nsv1027367	chr9:366387-697983	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
50	nsv1027550	chr9:366387-715668	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:502800-503800	Enhancers	Stomach Mucosa	stomach
2	chr9:503000-504200	Flanking Active TSS	Fetal Heart	heart
3	chr9:503200-503800	Enhancers	Gastric	stomach
4	chr9:503200-503800	Bivalent Enhancer	HepG2	liver
5	chr9:503200-504000	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
6	chr9:503200-504200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr9:503200-504200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr9:503200-504200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:503200-504200	Flanking Active TSS	Colonic Mucosa	Colon
10	chr9:503200-504400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
11	chr9:503400-503800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
12	chr9:503400-503800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:503400-503800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:503400-503800	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:503400-503800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:503400-503800	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:503400-503800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr9:503400-503800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr9:503400-503800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:503400-503800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:503400-503800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
22	chr9:503400-503800	Enhancers	Adipose Nuclei	Adipose
23	chr9:503400-503800	Active TSS	Brain Cingulate Gyrus	brain
24	chr9:503400-503800	Enhancers	Brain Hippocampus Middle	brain
25	chr9:503400-503800	Enhancers	Brain Substantia Nigra	brain
26	chr9:503400-503800	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr9:503400-503800	Bivalent/Poised TSS	Fetal Kidney	kidney
28	chr9:503400-503800	Enhancers	Left Ventricle	heart
29	chr9:503400-503800	Enhancers	Ovary	ovary
30	chr9:503400-503800	Enhancers	Pancreas	Pancrea
31	chr9:503400-503800	Enhancers	Rectal Smooth Muscle	rectum
32	chr9:503400-503800	Enhancers	Right Atrium	heart
33	chr9:503400-503800	Bivalent Enhancer	Thymus	Thymus
34	chr9:503400-503800	Enhancers	NHEK	skin
35	chr9:503400-504000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
36	chr9:503400-504000	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr9:503400-504000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
38	chr9:503400-504000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
39	chr9:503400-504000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
40	chr9:503400-504000	Bivalent Enhancer	Fetal Lung	lung
41	chr9:503400-504000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
42	chr9:503400-504000	Flanking Active TSS	A549	lung
43	chr9:503400-504200	Flanking Bivalent TSS/Enh	Placenta	Placenta
44	chr9:503400-504200	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr9:503400-504200	Flanking Active TSS	Hela-S3	cervix
46	chr9:503400-504400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
47	chr9:503400-504400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr9:503400-504400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr9:503400-504400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
50	chr9:503400-504400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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