Variant report

Variant	rs10119931
Chromosome Location	chr9:15495078-15495079
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15494263..15496917-chr9:15497648..15499315,2	K562	blood:
2	chr9:15493173..15497838-chr9:15508681..15511905,4	K562	blood:

Variant related genes	Relation type
ENSG00000164985	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10116904	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10117524	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10118595	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10118675	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10118719	0.83[EUR][1000 genomes]
rs10119257	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120171	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121012	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121911	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121971	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10123084	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124655	0.81[EUR][1000 genomes]
rs10124718	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124746	1.00[ASN][1000 genomes]
rs10125713	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1041529	1.00[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10962054	1.00[ASN][1000 genomes]
rs10962061	1.00[ASN][1000 genomes]
rs12336383	1.00[ASN][1000 genomes]
rs12336445	1.00[ASN][1000 genomes]
rs12337310	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344963	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12348561	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12348564	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12348780	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350062	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350903	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352398	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12353048	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12859	0.81[AMR][1000 genomes]
rs175762	1.00[ASN][1000 genomes]
rs1882939	0.94[EUR][1000 genomes]
rs202321	1.00[ASN][1000 genomes]
rs2064030	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202865	1.00[ASN][1000 genomes]
rs2665503	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2665510	0.94[EUR][1000 genomes]
rs2665511	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2665512	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2665515	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2737840	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276434	1.00[ASN][1000 genomes]
rs276437	1.00[ASN][1000 genomes]
rs276438	1.00[ASN][1000 genomes]
rs276439	1.00[ASN][1000 genomes]
rs276440	1.00[ASN][1000 genomes]
rs276442	1.00[ASN][1000 genomes]
rs276445	1.00[ASN][1000 genomes]
rs276446	1.00[ASN][1000 genomes]
rs276450	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276451	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2777951	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2795123	0.94[EUR][1000 genomes]
rs2795124	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2795125	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2795127	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2795128	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2821525	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2821529	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2821530	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2821533	0.94[EUR][1000 genomes]
rs2821542	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2821543	1.00[ASN][1000 genomes]
rs2821544	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28449490	1.00[ASN][1000 genomes]
rs28497163	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28610358	0.91[EUR][1000 genomes]
rs28796681	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28800775	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28805077	1.00[ASN][1000 genomes]
rs28808908	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28844368	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28882210	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28893033	1.00[ASN][1000 genomes]
rs3119700	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3122701	1.00[ASN][1000 genomes]
rs3122705	1.00[ASN][1000 genomes]
rs3129711	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs365710	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs381205	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs392627	1.00[ASN][1000 genomes]
rs398117	1.00[ASN][1000 genomes]
rs398178	1.00[ASN][1000 genomes]
rs399808	1.00[ASN][1000 genomes]
rs401393	1.00[ASN][1000 genomes]
rs413356	1.00[ASN][1000 genomes]
rs415157	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs418153	1.00[ASN][1000 genomes]
rs424131	1.00[ASN][1000 genomes]
rs443563	0.85[EUR][1000 genomes]
rs592452	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7021840	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs741930	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7852936	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7860339	1.00[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs796391	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs811282	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs909323	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs926154	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298729	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9406518	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv892628	chr9:15420805-15528290	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15442800-15508400	Strong transcription	Fetal Thymus	thymus
2	chr9:15444400-15495200	Weak transcription	Fetal Heart	heart
3	chr9:15447000-15509800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:15449800-15509000	Weak transcription	Small Intestine	intestine
5	chr9:15454600-15508600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:15460800-15510000	Weak transcription	Esophagus	oesophagus
7	chr9:15462800-15505200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:15467200-15501000	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:15467400-15505600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr9:15469200-15505600	Weak transcription	NHLF	lung
11	chr9:15472200-15509000	Weak transcription	HMEC	breast
12	chr9:15476400-15504000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr9:15476600-15508800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:15476600-15510000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr9:15477000-15504800	Weak transcription	HSMM	muscle
16	chr9:15477000-15509600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:15477800-15498200	Weak transcription	Placenta	Placenta
18	chr9:15478000-15505000	Weak transcription	Adipose Nuclei	Adipose
19	chr9:15480200-15505200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:15481600-15509600	Weak transcription	Aorta	Aorta
21	chr9:15482600-15501000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr9:15483000-15504800	Weak transcription	Brain Hippocampus Middle	brain
23	chr9:15483000-15504800	Weak transcription	Brain Substantia Nigra	brain
24	chr9:15483200-15496000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:15485200-15499200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr9:15485800-15501000	Weak transcription	HUVEC	blood vessel
27	chr9:15485800-15509800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr9:15486000-15505000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr9:15486200-15501600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr9:15486400-15505800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr9:15486600-15499000	Weak transcription	NH-A	brain
32	chr9:15486600-15504000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:15486800-15505600	Weak transcription	K562	blood
34	chr9:15488600-15501000	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr9:15488600-15502000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr9:15488800-15495600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr9:15488800-15505400	Weak transcription	NHDF-Ad	bronchial
38	chr9:15490600-15497200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:15491000-15497400	ZNF genes & repeats	GM12878-XiMat	blood
40	chr9:15491200-15496600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
41	chr9:15492600-15502000	Weak transcription	Liver	Liver
42	chr9:15492600-15508200	Weak transcription	Brain Angular Gyrus	brain
43	chr9:15492600-15509800	Weak transcription	Colonic Mucosa	Colon
44	chr9:15492800-15499200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr9:15492800-15505800	Weak transcription	Fetal Brain Male	brain
46	chr9:15493000-15495200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:15493000-15496000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr9:15493000-15496800	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr9:15493000-15498400	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr9:15493000-15499000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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