Variant report

Variant	rs10120883
Chromosome Location	chr9:116648813-116648814
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116646332..116648857-chr9:116689708..116691709,2	K562	blood:
2	chr9:116641182..116644797-chr9:116645893..116648885,3	MCF-7	breast:
3	chr9:116637356..116640118-chr9:116647677..116650674,3	MCF-7	breast:
4	chr9:116646398..116649591-chr9:116652096..116654192,3	K562	blood:
5	chr9:116638072..116644235-chr9:116644601..116650376,14	K562	blood:

Variant related genes	Relation type
ENSG00000157657	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10513222	0.85[CEU][hapmap]
rs10817531	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10982007	0.86[CEU][hapmap]
rs1330169	0.86[CEU][hapmap]
rs2065184	1.00[CHB][hapmap];0.86[YRI][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2150014	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs2183364	0.81[CEU][hapmap]
rs2418259	0.85[CEU][hapmap]
rs35381898	0.91[ASN][1000 genomes]
rs4979294	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4979295	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4979298	0.85[CEU][hapmap]
rs6478045	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6478046	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478047	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7038501	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7047895	0.86[CEU][hapmap]
rs7855811	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7870363	0.89[CHB][hapmap]
rs882980	0.85[CEU][hapmap]
rs944180	0.86[CEU][hapmap]
rs9942975	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116639200-116652800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:116639200-116663400	Weak transcription	Gastric	stomach
3	chr9:116642000-116649400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:116644600-116650400	Weak transcription	Brain Germinal Matrix	brain
5	chr9:116645000-116649000	Weak transcription	Fetal Kidney	kidney
6	chr9:116646800-116649000	Enhancers	Fetal Heart	heart
7	chr9:116646800-116649200	Flanking Active TSS	K562	blood
8	chr9:116646800-116649800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr9:116646800-116650400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:116646800-116650600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr9:116646800-116650800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr9:116647000-116649000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:116647000-116650200	Enhancers	HUVEC	blood vessel
14	chr9:116647000-116650600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr9:116647000-116650800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr9:116647000-116651800	Enhancers	Fetal Muscle Leg	muscle
17	chr9:116647200-116649800	Enhancers	Stomach Mucosa	stomach
18	chr9:116647400-116649600	Enhancers	NH-A	brain
19	chr9:116647400-116651200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr9:116647600-116649400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:116647600-116649800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr9:116647600-116649800	Weak transcription	Esophagus	oesophagus
23	chr9:116647600-116650000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr9:116648000-116649000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:116648000-116649200	Flanking Active TSS	Adipose Nuclei	Adipose
26	chr9:116648000-116649200	Enhancers	HSMM	muscle
27	chr9:116648000-116649600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr9:116648000-116649800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:116648000-116649800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:116648000-116651200	Enhancers	Fetal Stomach	stomach
31	chr9:116648200-116649000	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr9:116648200-116649000	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr9:116648200-116649000	Enhancers	Brain Anterior Caudate	brain
34	chr9:116648200-116649000	Flanking Active TSS	NHEK	skin
35	chr9:116648200-116649200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:116648200-116649200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr9:116648200-116649200	Flanking Active TSS	Osteobl	bone
38	chr9:116648200-116649600	Enhancers	Fetal Lung	lung
39	chr9:116648200-116649600	Enhancers	Small Intestine	intestine
40	chr9:116648200-116649600	Enhancers	A549	lung
41	chr9:116648200-116650600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr9:116648200-116651000	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr9:116648400-116649000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr9:116648400-116649000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr9:116648400-116649000	Active TSS	Primary T helper naive cells from peripheral blood	blood
46	chr9:116648400-116649000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr9:116648400-116649000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr9:116648400-116649000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
49	chr9:116648400-116649000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr9:116648400-116649000	Enhancers	GM12878-XiMat	blood

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