Variant report

Variant	rs10123606
Chromosome Location	chr9:116669379-116669380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116667918..116669920-chr9:116674262..116678050,3	MCF-7	breast:
2	chr9:116666574..116671426-chr9:116673853..116679155,7	K562	blood:
3	chr9:116663867..116665785-chr9:116668142..116670914,2	K562	blood:
4	chr9:116668474..116670101-chr9:116671366..116673510,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10116566	0.85[ASN][1000 genomes]
rs10122390	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10513222	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10817532	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10982000	0.85[ASN][1000 genomes]
rs2183364	0.83[EUR][1000 genomes]
rs2900568	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2900569	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35189176	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4979296	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4979297	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7026176	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7029830	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7040839	0.83[ASN][1000 genomes]
rs7047895	0.83[EUR][1000 genomes]
rs7852787	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7853127	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs882980	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116651200-116675000	Weak transcription	Colon Smooth Muscle	Colon
2	chr9:116653200-116669600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:116653200-116671800	Weak transcription	Fetal Lung	lung
4	chr9:116653800-116674000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:116659400-116685400	Weak transcription	A549	lung
6	chr9:116662000-116671400	Weak transcription	Right Ventricle	heart
7	chr9:116664000-116669600	Weak transcription	Fetal Intestine Small	intestine
8	chr9:116664000-116674400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:116664200-116669400	Weak transcription	Ovary	ovary
10	chr9:116664400-116669400	Weak transcription	Spleen	Spleen
11	chr9:116664400-116669600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:116664400-116669600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr9:116666400-116683800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr9:116666600-116683000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:116667200-116674200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:116667400-116684400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:116667800-116673200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr9:116668000-116669800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:116668000-116669800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:116668000-116671400	Enhancers	Fetal Thymus	thymus
21	chr9:116668000-116681800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:116668200-116669800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:116668400-116669400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:116668400-116669400	Enhancers	NH-A	brain
25	chr9:116668400-116669400	Enhancers	Osteobl	bone
26	chr9:116668400-116669600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:116668400-116669600	Enhancers	NHDF-Ad	bronchial
28	chr9:116668400-116669600	Enhancers	NHLF	lung
29	chr9:116668400-116669800	Enhancers	HUVEC	blood vessel
30	chr9:116668400-116670000	Enhancers	Esophagus	oesophagus
31	chr9:116668400-116670200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr9:116668400-116670600	Enhancers	H1 Cell Line	embryonic stem cell
33	chr9:116668600-116669400	Enhancers	Fetal Muscle Leg	muscle
34	chr9:116668600-116669600	Enhancers	Muscle Satellite Cultured Cells	--
35	chr9:116668600-116669600	Enhancers	Brain Anterior Caudate	brain
36	chr9:116668600-116669800	Enhancers	HSMM	muscle
37	chr9:116668600-116670000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr9:116668600-116670000	Enhancers	Psoas Muscle	Psoas
39	chr9:116668600-116670000	Weak transcription	Thymus	Thymus
40	chr9:116668600-116670000	Enhancers	HSMMtube	muscle
41	chr9:116668600-116670200	Enhancers	Stomach Mucosa	stomach
42	chr9:116668600-116672600	Enhancers	Pancreas	Pancrea
43	chr9:116668800-116678800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr9:116669000-116669400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr9:116669000-116669400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:116669000-116669400	Enhancers	Adipose Nuclei	Adipose
47	chr9:116669000-116669600	Enhancers	Aorta	Aorta
48	chr9:116669000-116669800	Enhancers	Liver	Liver
49	chr9:116669000-116669800	Enhancers	Right Atrium	heart
50	chr9:116669000-116670000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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