Variant report

Variant	rs10123762
Chromosome Location	chr9:71169536-71169537
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10114981	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10117398	1.00[AMR][1000 genomes]
rs10120745	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10123848	0.84[AFR][1000 genomes]
rs10123970	1.00[AMR][1000 genomes]
rs10124105	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10869040	0.94[AFR][1000 genomes]
rs11141210	1.00[AMR][1000 genomes]
rs12335607	1.00[AMR][1000 genomes]
rs12341862	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12342668	0.93[AFR][1000 genomes]
rs12343790	1.00[AMR][1000 genomes]
rs12346301	1.00[AMR][1000 genomes]
rs12348463	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349403	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12351373	1.00[AMR][1000 genomes]
rs187844	1.00[AMR][1000 genomes]
rs1928255	1.00[AMR][1000 genomes]
rs28373225	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28515496	1.00[AMR][1000 genomes]
rs28539619	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28540360	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28685588	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60797267	1.00[AMR][1000 genomes]
rs7036790	1.00[AMR][1000 genomes]
rs73449507	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893413	chr9:71130848-71196984	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893411	chr9:71130848-71199545	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv893412	chr9:71130848-71199545	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1024967	chr9:71130848-71210031	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv482506	chr9:71130848-71280888	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv466392	chr9:71130848-71318817	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv614546	chr9:71130848-71318817	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1026962	chr9:71130848-71357605	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	nsv893414	chr9:71139378-71320732	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71152200-71170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:71162000-71169800	Weak transcription	Gastric	stomach
3	chr9:71162200-71174800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr9:71162200-71175000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:71163000-71170400	Weak transcription	Fetal Kidney	kidney
6	chr9:71163600-71170400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:71166000-71169600	Enhancers	Colon Smooth Muscle	Colon
8	chr9:71166000-71169600	Enhancers	Rectal Smooth Muscle	rectum
9	chr9:71166400-71170600	Weak transcription	Primary B cells from cord blood	blood
10	chr9:71166400-71170800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:71166600-71173600	Weak transcription	Left Ventricle	heart
12	chr9:71166600-71173600	Weak transcription	Right Atrium	heart
13	chr9:71166800-71170000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:71167400-71170200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr9:71167400-71171200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:71167800-71173000	Weak transcription	Fetal Heart	heart
17	chr9:71168000-71170200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr9:71168000-71170200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr9:71168000-71173000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr9:71168400-71169800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:71169000-71170000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:71169200-71170000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:71169400-71174400	Weak transcription	Stomach Mucosa	stomach

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