Variant report

Variant	rs10124400
Chromosome Location	chr9:15227246-15227247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12341643	1.00[ASN][1000 genomes]
rs12347380	1.00[ASN][1000 genomes]
rs28729420	1.00[ASN][1000 genomes]
rs525147	1.00[ASN][1000 genomes]
rs548264	1.00[ASN][1000 genomes]
rs563044	1.00[ASN][1000 genomes]
rs603033	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv521191	chr9:15218947-15246652	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15163000-15233000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:15171000-15228600	Weak transcription	Stomach Mucosa	stomach
3	chr9:15182200-15229200	Weak transcription	Gastric	stomach
4	chr9:15192200-15229200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr9:15193400-15249600	Weak transcription	Colonic Mucosa	Colon
6	chr9:15206000-15229200	Weak transcription	Ovary	ovary
7	chr9:15210000-15231800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr9:15211400-15229000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr9:15211400-15229000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr9:15215400-15227400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:15220000-15229200	Weak transcription	Fetal Kidney	kidney
12	chr9:15220000-15229200	Weak transcription	Small Intestine	intestine
13	chr9:15221200-15229200	Weak transcription	Aorta	Aorta
14	chr9:15221200-15242200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:15221800-15231200	Weak transcription	Fetal Intestine Small	intestine
16	chr9:15221800-15233000	Weak transcription	Osteobl	bone
17	chr9:15221800-15242800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:15222600-15230200	Weak transcription	Left Ventricle	heart
19	chr9:15223400-15258200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr9:15223600-15228600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr9:15223600-15232000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr9:15223600-15232600	Weak transcription	Fetal Stomach	stomach
23	chr9:15223800-15227600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:15223800-15235200	Weak transcription	Fetal Lung	lung
25	chr9:15224400-15227400	Weak transcription	Lung	lung
26	chr9:15224400-15242800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr9:15224600-15227400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:15224600-15228400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr9:15224600-15228400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr9:15224600-15229200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr9:15224600-15229200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr9:15224600-15229200	Weak transcription	Esophagus	oesophagus
33	chr9:15224600-15229200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr9:15224600-15231200	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr9:15224600-15231800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:15224600-15232200	Weak transcription	Fetal Intestine Large	intestine
37	chr9:15224600-15235200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr9:15224600-15243600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr9:15224600-15244400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr9:15224800-15232800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:15224800-15235000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr9:15225000-15229200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr9:15225000-15231800	Weak transcription	Primary T cells from cord blood	blood
44	chr9:15225200-15227600	Weak transcription	HepG2	liver
45	chr9:15225400-15231800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr9:15226000-15229200	Weak transcription	Primary B cells from peripheral blood	blood
47	chr9:15226000-15229200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr9:15226800-15228800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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