Variant report

Variant	rs10127707
Chromosome Location	chr1:172789206-172789207
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10449225	0.81[AFR][1000 genomes]
rs10912474	0.83[AFR][1000 genomes]
rs10912476	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10912477	0.81[AFR][1000 genomes]
rs11810332	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11810687	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141975	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12749912	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12760127	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1476423	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes]
rs17279900	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2077690	0.91[CHD][hapmap]
rs2131375	0.91[CHD][hapmap]
rs35319454	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36060149	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61810478	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6672031	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6684651	0.81[AFR][1000 genomes]
rs6684988	0.81[AFR][1000 genomes]
rs6686744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6700605	0.84[AFR][1000 genomes]
rs6703999	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs704841	0.91[CHD][hapmap]
rs733684	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs859723	0.91[CHD][hapmap]
rs859724	0.91[CHD][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10127707	SELE	cis	parietal	SCAN

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172786400-172789400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr1:172786800-172789400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr1:172787400-172789400	Enhancers	Primary hematopoietic stem cells	blood
4	chr1:172787400-172793800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:172787600-172793800	Enhancers	NHDF-Ad	bronchial
6	chr1:172787800-172791200	Enhancers	Osteobl	bone
7	chr1:172788400-172790200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:172788400-172790400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:172788400-172790400	Weak transcription	K562	blood
10	chr1:172788400-172790600	Weak transcription	Brain Hippocampus Middle	brain
11	chr1:172788400-172793600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:172788400-172795400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:172788600-172789400	Enhancers	Dnd41	blood
14	chr1:172788600-172789400	Weak transcription	HSMMtube	muscle
15	chr1:172788600-172789600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr1:172788600-172789600	Flanking Active TSS	GM12878-XiMat	blood
17	chr1:172788600-172790200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:172788600-172790200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:172788600-172790400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:172788600-172790400	Weak transcription	Adipose Nuclei	Adipose
21	chr1:172788800-172797000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr1:172789000-172790000	Enhancers	Primary B cells from peripheral blood	blood
23	chr1:172789000-172790200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:172789000-172790400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr1:172789000-172790600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr1:172789000-172790600	Enhancers	Primary B cells from cord blood	blood
27	chr1:172789000-172790600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr1:172789000-172791400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr1:172789000-172792400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr1:172789000-172795400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr1:172789000-172795400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr1:172789000-172795400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr1:172789000-172796600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr1:172789000-172797000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr1:172789200-172789600	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr1:172789200-172789600	Weak transcription	NHLF	lung
37	chr1:172789200-172790200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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