Variant report

Variant	rs1012783
Chromosome Location	chr20:24080087-24080088
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1005527	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1123671	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11697353	0.89[ASN][1000 genomes]
rs11699743	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12480224	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1573008	0.89[ASN][1000 genomes]
rs17249809	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1884519	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2070275	0.98[ASN][1000 genomes]
rs2103922	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35663453	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55921601	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6132695	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6132696	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6138201	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6138207	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6138210	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61657263	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs761864	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24075000-24081000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr20:24076200-24082800	Weak transcription	HMEC	breast
3	chr20:24077400-24081200	Weak transcription	Pancreas	Pancrea
4	chr20:24077800-24082800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr20:24078000-24081200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr20:24078400-24081000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr20:24079200-24080400	Enhancers	NH-A	brain
8	chr20:24079200-24081400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr20:24079200-24081400	Enhancers	Osteobl	bone
10	chr20:24079200-24081800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr20:24079200-24085200	Enhancers	NHEK	skin
12	chr20:24079400-24080200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr20:24079400-24080200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr20:24079400-24080200	Enhancers	HUVEC	blood vessel
15	chr20:24079400-24080400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr20:24079400-24080400	Enhancers	Ovary	ovary
17	chr20:24079400-24084400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr20:24079800-24082800	Weak transcription	A549	lung
19	chr20:24080000-24080200	Enhancers	Placenta	Placenta
20	chr20:24080000-24081600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr20:24080000-24083200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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