Variant report

Variant	rs10130235
Chromosome Location	chr14:72458700-72458701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10129266	1.00[AMR][1000 genomes]
rs10134070	1.00[AMR][1000 genomes]
rs10134883	1.00[AMR][1000 genomes]
rs10146194	1.00[AMR][1000 genomes]
rs2877775	1.00[AMR][1000 genomes]
rs28829720	1.00[AMR][1000 genomes]
rs8011972	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72457000-72460200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72457000-72461200	Weak transcription	Fetal Heart	heart
3	chr14:72457200-72461000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:72457400-72462000	Weak transcription	Right Ventricle	heart
5	chr14:72457600-72462000	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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