Variant report

Variant	rs10130560
Chromosome Location	chr14:66081105-66081106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66066064..66069081-chr14:66080288..66082777,3	MCF-7	breast:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10129187	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10129472	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10129732	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10133167	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10133902	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10133903	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10135594	0.86[EUR][1000 genomes]
rs10135934	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10136412	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10136763	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10141293	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10143822	0.86[EUR][1000 genomes]
rs10145561	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10145993	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10145996	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10146179	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10151921	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10162379	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10162474	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10162506	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10220303	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10220304	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10483779	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10483784	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12588029	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13379147	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13379229	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17102686	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17102757	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17102836	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17102844	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17102920	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17181798	0.91[ASN][1000 genomes]
rs17779061	0.90[AMR][1000 genomes]
rs17779571	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1813030	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1950559	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1953419	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1958562	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1959146	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1959147	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1959148	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2002691	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2092915	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2411814	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2411818	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2411819	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28373922	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28390075	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28427101	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28430347	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28452027	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28694288	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28695252	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28823043	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28830595	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28871950	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2898817	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2898819	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3783707	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3783712	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4516142	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs45549535	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57638372	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58170348	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59970730	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6573623	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7140251	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7141326	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7145319	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7145834	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7148401	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7160505	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73284130	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73284149	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73284201	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8003664	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8014146	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8015947	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8017901	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9323462	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323464	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs945319	0.91[AMR][1000 genomes]
rs9972109	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv902026	chr14:66061020-66171541	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66059200-66082600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr14:66061800-66081800	Weak transcription	Dnd41	blood
3	chr14:66061800-66099000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:66062000-66082400	Weak transcription	Primary B cells from cord blood	blood
5	chr14:66066200-66084000	Weak transcription	Fetal Intestine Large	intestine
6	chr14:66066600-66084000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:66070600-66096200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr14:66070800-66083600	Weak transcription	GM12878-XiMat	blood
9	chr14:66071800-66082600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr14:66072200-66082600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr14:66072200-66085600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr14:66072400-66082200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr14:66072400-66083600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr14:66072600-66083000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr14:66073600-66096000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr14:66075400-66096400	Weak transcription	Adipose Nuclei	Adipose
17	chr14:66077400-66083800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr14:66077600-66097600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr14:66077600-66114400	Weak transcription	Ovary	ovary
20	chr14:66078000-66094200	Weak transcription	Fetal Intestine Small	intestine
21	chr14:66078000-66100600	Weak transcription	Brain Angular Gyrus	brain
22	chr14:66079200-66096200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr14:66079400-66104400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr14:66079600-66082800	Weak transcription	Primary T cells from cord blood	blood
25	chr14:66079600-66096400	Weak transcription	Brain Anterior Caudate	brain
26	chr14:66079600-66104400	Weak transcription	Gastric	stomach
27	chr14:66080000-66100400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:66080200-66092200	Weak transcription	Brain Substantia Nigra	brain
29	chr14:66080400-66096600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr14:66080800-66092200	Weak transcription	Brain Hippocampus Middle	brain
31	chr14:66080800-66117600	Weak transcription	Left Ventricle	heart
32	chr14:66081000-66083200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr14:66081000-66084000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr14:66081000-66084000	Weak transcription	Fetal Thymus	thymus
35	chr14:66081000-66096200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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