Variant report

Variant	rs10131089
Chromosome Location	chr14:81103879-81103880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11844022	0.92[ASW][hapmap];0.84[LWK][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11845635	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58879257	1.00[EUR][1000 genomes]
rs59450199	1.00[EUR][1000 genomes]
rs74064241	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81083400-81109400	Weak transcription	Dnd41	blood
2	chr14:81087400-81104200	Weak transcription	HSMM	muscle
3	chr14:81099000-81106200	Weak transcription	Psoas Muscle	Psoas
4	chr14:81099000-81109600	Weak transcription	Thymus	Thymus
5	chr14:81100400-81105600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:81100600-81104200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:81100600-81104800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:81100800-81104000	Weak transcription	NHDF-Ad	bronchial
9	chr14:81100800-81104000	Weak transcription	NHEK	skin
10	chr14:81102400-81104600	Enhancers	A549	lung
11	chr14:81102600-81104600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr14:81103200-81106400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:81103400-81104600	Enhancers	HUVEC	blood vessel
14	chr14:81103800-81105800	Enhancers	Osteobl	bone
15	chr14:81103800-81106400	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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