Variant report

Variant	rs1013272
Chromosome Location	chr9:72577857-72577858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10156645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1032414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511976	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10511977	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140833	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11140836	1.00[CEU][hapmap]
rs11140842	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs11140857	0.89[EUR][1000 genomes]
rs11140862	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11140863	0.89[EUR][1000 genomes]
rs11140864	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11140879	0.82[EUR][1000 genomes]
rs11140890	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11140986	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11141038	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11141039	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11141040	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11141043	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11141049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12335359	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12339764	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12340850	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12342567	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12342648	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12342964	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12343259	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12343759	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12343851	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344385	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344550	0.87[CEU][hapmap]
rs12345448	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12347023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12347970	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12349644	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12350185	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12350231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352875	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17086149	0.89[EUR][1000 genomes]
rs1948427	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28799079	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4637911	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55708059	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55833239	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56198641	0.81[AMR][1000 genomes]
rs56336865	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57482063	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59220396	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59269830	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7027808	0.89[EUR][1000 genomes]
rs7044303	0.89[EUR][1000 genomes]
rs72709145	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709155	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709188	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72725226	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72725252	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725262	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725264	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7853925	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7855138	0.80[EUR][1000 genomes]
rs7870671	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72576800-72578000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr9:72576800-72580400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:72576800-72580600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr9:72577000-72578600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:72577000-72580400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr9:72577200-72578200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:72577200-72578400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:72577200-72578400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:72577200-72578600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:72577200-72578600	Weak transcription	NH-A	brain
11	chr9:72577200-72578600	Weak transcription	NHDF-Ad	bronchial
12	chr9:72577200-72578600	Weak transcription	NHLF	lung
13	chr9:72577200-72578600	Weak transcription	Osteobl	bone
14	chr9:72577200-72579000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:72577200-72579800	Weak transcription	HMEC	breast
16	chr9:72577200-72580000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:72577200-72584400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:72577400-72578400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr9:72577600-72578600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr9:72577600-72580000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:72577800-72578200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr9:72577800-72579400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:72577800-72579800	Weak transcription	NHEK	skin
24	chr9:72577800-72580400	Enhancers	H1 Cell Line	embryonic stem cell

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