Variant report

Variant	rs10132938
Chromosome Location	chr14:35759510-35759511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35757780..35767592-chr14:35866063..35878024,53	MCF-7	breast:
2	chr14:35757192..35766588-chr14:35865950..35877395,53	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100906	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10130007	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10133402	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10134499	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10134666	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10136494	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10137095	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10137440	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs10137488	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10140636	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10140985	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10141688	0.85[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143083	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146661	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10147734	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10148143	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10148234	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10148868	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148872	0.85[AMR][1000 genomes]
rs10149412	1.00[AMR][1000 genomes]
rs10467707	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10715	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11156879	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11156880	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11547365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11851831	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs12323542	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13393	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17458583	0.84[AFR][1000 genomes]
rs2277460	0.84[AFR][1000 genomes]
rs2415281	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28460322	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28461608	0.93[AFR][1000 genomes]
rs28522717	0.93[AFR][1000 genomes]
rs28625199	1.00[AMR][1000 genomes]
rs55747728	0.85[AMR][1000 genomes]
rs56762985	1.00[AMR][1000 genomes]
rs57606486	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58058174	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58177251	0.85[AMR][1000 genomes]
rs59708026	0.85[AMR][1000 genomes]
rs59954445	0.85[AMR][1000 genomes]
rs60206834	0.85[AMR][1000 genomes]
rs60261507	0.80[EUR][1000 genomes]
rs7140912	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7141690	0.85[AMR][1000 genomes]
rs7145160	0.80[EUR][1000 genomes]
rs7145488	0.85[AMR][1000 genomes]
rs7154775	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158592	0.85[AMR][1000 genomes]
rs8004205	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8014594	0.84[AFR][1000 genomes]
rs8017330	0.86[YRI][hapmap];0.93[AFR][1000 genomes]
rs8018707	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9322944	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9322945	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9322946	1.00[CEU][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
5	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
6	nsv1038396	chr14:35714499-35788189	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1045288	chr14:35735886-35788189	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1043840	chr14:35739319-35791879	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv1794822	chr14:35755087-35761366	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35684600-35760800	Weak transcription	HSMM	muscle
2	chr14:35706800-35760800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:35716800-35760600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:35716800-35761000	Weak transcription	Spleen	Spleen
5	chr14:35717000-35760800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr14:35722000-35760800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:35727200-35761000	Weak transcription	NHLF	lung
8	chr14:35730200-35760600	Weak transcription	Fetal Brain Female	brain
9	chr14:35734400-35760600	Weak transcription	Right Ventricle	heart
10	chr14:35734400-35760800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:35736000-35760800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr14:35737400-35761000	Weak transcription	Gastric	stomach
13	chr14:35741200-35760800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:35743400-35760800	Weak transcription	HMEC	breast
15	chr14:35743600-35760800	Weak transcription	Brain Anterior Caudate	brain
16	chr14:35743800-35760800	Weak transcription	Osteobl	bone
17	chr14:35744000-35760800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:35744000-35760800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr14:35744000-35760800	Weak transcription	Brain Substantia Nigra	brain
20	chr14:35744000-35760800	Weak transcription	Fetal Lung	lung
21	chr14:35744000-35760800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr14:35744000-35761000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:35744400-35760800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr14:35744800-35760800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:35745200-35760600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr14:35745200-35760800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr14:35745400-35760800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr14:35745600-35760800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr14:35745800-35760400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr14:35745800-35760800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr14:35746000-35760800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr14:35746000-35760800	Weak transcription	Brain Hippocampus Middle	brain
33	chr14:35746000-35760800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr14:35746000-35760800	Weak transcription	A549	lung
35	chr14:35746000-35761000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr14:35746200-35760800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:35746600-35760800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr14:35746600-35760800	Weak transcription	Aorta	Aorta
39	chr14:35747200-35761000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:35748000-35760600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr14:35750600-35761000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr14:35751600-35760600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr14:35752000-35761000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr14:35752400-35760200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr14:35752400-35760600	Weak transcription	Fetal Stomach	stomach
46	chr14:35753600-35760600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr14:35754000-35760800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr14:35754400-35760600	Weak transcription	Small Intestine	intestine
49	chr14:35755800-35760800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr14:35756200-35760800	Enhancers	Fetal Thymus	thymus

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