Variant report

Variant	rs10134553
Chromosome Location	chr14:70261084-70261085
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70233735..70236453-chr14:70260572..70263548,2	MCF-7	breast:
2	chr14:70232807..70236599-chr14:70258416..70262612,5	K562	blood:
3	chr14:70255116..70258123-chr14:70258993..70261547,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C14orf162-5	chr14:70258997-70263055	ucscGeneNc_uc001xmj_1

Variant related genes	Relation type
ENSG00000100650	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10130174	0.84[YRI][hapmap];0.95[AFR][1000 genomes]
rs10130926	0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs10151549	1.00[EUR][1000 genomes]
rs10450925	1.00[ASN][1000 genomes]
rs11628646	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12431918	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12896497	1.00[ASN][1000 genomes]
rs17107278	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107282	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs2332166	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28488181	0.86[AFR][1000 genomes]
rs28595072	0.92[AFR][1000 genomes]
rs28607349	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56203918	1.00[ASN][1000 genomes]
rs73283334	1.00[ASN][1000 genomes]
rs73285246	1.00[ASN][1000 genomes]
rs73285258	1.00[ASN][1000 genomes]
rs73285283	1.00[ASN][1000 genomes]
rs8014019	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018389	0.93[AFR][1000 genomes]
rs9323529	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70238200-70263600	Weak transcription	Stomach Mucosa	stomach
2	chr14:70246400-70261800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:70246400-70264000	Weak transcription	Fetal Intestine Small	intestine
4	chr14:70247000-70264600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr14:70248200-70263000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:70248200-70271600	Weak transcription	Psoas Muscle	Psoas
7	chr14:70248400-70264400	Weak transcription	Esophagus	oesophagus
8	chr14:70248600-70263600	Weak transcription	Right Ventricle	heart
9	chr14:70248800-70264000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr14:70249000-70264000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr14:70251800-70264200	Weak transcription	Colonic Mucosa	Colon
12	chr14:70253400-70263400	Weak transcription	Lung	lung
13	chr14:70253400-70263600	Weak transcription	Gastric	stomach
14	chr14:70253400-70263800	Weak transcription	Brain Anterior Caudate	brain
15	chr14:70253400-70264200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr14:70253600-70263400	Weak transcription	Placenta	Placenta
17	chr14:70253600-70263400	Weak transcription	Left Ventricle	heart
18	chr14:70253600-70263800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr14:70253600-70263800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr14:70253800-70264000	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr14:70254200-70263600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr14:70254200-70265800	Weak transcription	Spleen	Spleen
23	chr14:70254800-70275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:70258400-70262200	Enhancers	HepG2	liver
25	chr14:70260000-70262000	Flanking Active TSS	Liver	Liver

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