Variant report

Variant	rs10134773
Chromosome Location	chr14:37467500-37467501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10136927	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10483482	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17105857	0.95[YRI][hapmap];0.88[AFR][1000 genomes]
rs17105878	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs28420078	0.87[AFR][1000 genomes]
rs28583769	0.82[AFR][1000 genomes]
rs28647542	0.87[AFR][1000 genomes]
rs28826271	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37465400-37467800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr14:37465400-37468000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr14:37465600-37467800	Enhancers	A549	lung
4	chr14:37465600-37468400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:37465600-37469800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:37466600-37468600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr14:37467000-37467600	Enhancers	HUVEC	blood vessel
8	chr14:37467000-37467600	Enhancers	NH-A	brain
9	chr14:37467000-37488800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:37467200-37467600	Enhancers	Colon Smooth Muscle	Colon
11	chr14:37467200-37467800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:37467400-37467800	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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