Variant report

Variant	rs10134888
Chromosome Location	chr14:32568855-32568856
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:32552263..32554999-chr14:32566747..32569255,3	MCF-7	breast:
2	chr14:32546185..32548317-chr14:32567777..32569905,2	MCF-7	breast:
3	chr14:32564995..32566566-chr14:32566776..32569180,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100852	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10143850	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11849454	1.00[EUR][1000 genomes]
rs12100687	1.00[EUR][1000 genomes]
rs12100688	1.00[EUR][1000 genomes]
rs12100768	1.00[EUR][1000 genomes]
rs12100930	1.00[EUR][1000 genomes]
rs12100931	1.00[EUR][1000 genomes]
rs12101226	1.00[EUR][1000 genomes]
rs17098508	1.00[EUR][1000 genomes]
rs28495208	1.00[AMR][1000 genomes]
rs28765407	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28802314	1.00[EUR][1000 genomes]
rs28845852	1.00[EUR][1000 genomes]
rs57218277	1.00[EUR][1000 genomes]
rs58280109	1.00[EUR][1000 genomes]
rs59021515	1.00[EUR][1000 genomes]
rs59609395	1.00[EUR][1000 genomes]
rs7140954	1.00[EUR][1000 genomes]
rs7152059	1.00[EUR][1000 genomes]
rs7157301	1.00[EUR][1000 genomes]
rs74041589	1.00[EUR][1000 genomes]
rs74041590	1.00[EUR][1000 genomes]
rs74041597	1.00[EUR][1000 genomes]
rs74041599	1.00[EUR][1000 genomes]
rs74041600	1.00[EUR][1000 genomes]
rs8012001	1.00[EUR][1000 genomes]
rs8021655	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32547600-32571400	Weak transcription	Spleen	Spleen
2	chr14:32548000-32586200	Weak transcription	Lung	lung
3	chr14:32548000-32597400	Weak transcription	Esophagus	oesophagus
4	chr14:32548400-32569600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:32548400-32571200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr14:32548600-32584000	Weak transcription	Fetal Stomach	stomach
7	chr14:32548800-32570600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr14:32548800-32571600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:32548800-32572800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:32549000-32574000	Weak transcription	Aorta	Aorta
11	chr14:32549200-32570800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr14:32549200-32571600	Weak transcription	K562	blood
13	chr14:32551000-32574000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:32552000-32573600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr14:32552000-32596800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:32554600-32597200	Weak transcription	Gastric	stomach
17	chr14:32555000-32579600	Weak transcription	NHLF	lung
18	chr14:32555600-32570800	Weak transcription	GM12878-XiMat	blood
19	chr14:32555600-32571400	Weak transcription	Small Intestine	intestine
20	chr14:32555600-32573600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr14:32555800-32570400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr14:32557200-32570200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr14:32557400-32573400	Weak transcription	Stomach Mucosa	stomach
24	chr14:32557800-32571400	Weak transcription	Thymus	Thymus
25	chr14:32557800-32571600	Weak transcription	Colon Smooth Muscle	Colon
26	chr14:32559200-32570200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:32559400-32571200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr14:32559600-32572000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr14:32559800-32570800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:32559800-32570800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr14:32560000-32576000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr14:32560400-32570200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr14:32560400-32571400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr14:32560400-32571400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr14:32561200-32569800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr14:32561600-32570800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr14:32561800-32571000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr14:32562000-32571000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr14:32562200-32570000	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr14:32562200-32579200	Weak transcription	HSMMtube	muscle
41	chr14:32562400-32569200	Weak transcription	NHEK	skin
42	chr14:32562400-32578400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr14:32562400-32588200	Weak transcription	Brain Germinal Matrix	brain
44	chr14:32562600-32570400	Weak transcription	Primary T cells from cord blood	blood
45	chr14:32562600-32571400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr14:32562600-32571400	Weak transcription	Brain Substantia Nigra	brain
47	chr14:32562600-32574000	Weak transcription	Adipose Nuclei	Adipose
48	chr14:32562600-32575600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr14:32562600-32583400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr14:32562600-32586600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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