Variant report

Variant	rs10135042
Chromosome Location	chr14:55635223-55635224
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55634555..55636876-chr14:55655010..55657376,2	K562	blood:
2	chr14:55608188..55610123-chr14:55635183..55636892,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10132251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133318	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10137382	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10138287	0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10140700	0.90[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10141962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10143190	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146432	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10148371	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10149038	0.90[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10151981	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10438128	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13379284	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128204	1.00[EUR][1000 genomes]
rs17128286	0.90[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128299	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128411	1.00[EUR][1000 genomes]
rs28415601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28458773	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28459500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28488729	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28584735	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34630492	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60302297	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60342915	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9323281	1.00[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10135042	DLG7	cis	multi-tissue	Pritchard

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55604000-55636400	Strong transcription	Fetal Thymus	thymus
3	chr14:55605200-55656000	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr14:55605400-55657000	Weak transcription	Fetal Kidney	kidney
5	chr14:55606600-55656000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:55607000-55656000	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr14:55607200-55652200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr14:55607600-55651800	Strong transcription	H1 Cell Line	embryonic stem cell
9	chr14:55607600-55655200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr14:55610600-55651600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr14:55610600-55655400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:55610600-55655600	Strong transcription	Dnd41	blood
13	chr14:55610800-55656000	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr14:55611000-55656000	Weak transcription	Fetal Heart	heart
15	chr14:55611200-55643400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:55611600-55656600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:55612400-55637400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr14:55613400-55639200	Weak transcription	Fetal Intestine Small	intestine
19	chr14:55613400-55657800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr14:55619200-55646800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr14:55619600-55643800	Weak transcription	NHDF-Ad	bronchial
22	chr14:55619800-55647400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr14:55621400-55643800	Weak transcription	NH-A	brain
24	chr14:55621800-55646200	Weak transcription	NHEK	skin
25	chr14:55622600-55649000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr14:55623600-55657000	Weak transcription	Fetal Muscle Leg	muscle
27	chr14:55624000-55637800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr14:55624800-55644200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr14:55625000-55638000	Weak transcription	Fetal Intestine Large	intestine
30	chr14:55629000-55635600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr14:55629000-55650400	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr14:55629200-55635400	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr14:55629200-55639000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr14:55629200-55655600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:55629400-55650600	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr14:55629400-55652000	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr14:55630000-55635800	Strong transcription	A549	lung
38	chr14:55630200-55636400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr14:55630200-55656600	Weak transcription	Fetal Brain Female	brain
40	chr14:55631000-55637200	Weak transcription	Fetal Lung	lung
41	chr14:55631000-55637800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr14:55631200-55645800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr14:55631200-55649400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr14:55631200-55650400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr14:55632400-55656200	Weak transcription	HSMM	muscle
46	chr14:55632600-55646800	Weak transcription	Osteobl	bone
47	chr14:55632600-55647000	Weak transcription	NHLF	lung
48	chr14:55633600-55635400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr14:55633600-55636800	Strong transcription	H9 Cell Line	embryonic stem cell
50	chr14:55634200-55636600	Strong transcription	HMEC	breast

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