Variant report

Variant	rs10135224
Chromosome Location	chr14:66100162-66100163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10083327	0.85[AFR][1000 genomes]
rs10083356	0.89[AFR][1000 genomes]
rs10129221	0.89[AFR][1000 genomes]
rs10129828	0.89[AFR][1000 genomes]
rs10131616	1.00[AFR][1000 genomes]
rs10132138	0.89[AFR][1000 genomes]
rs10132575	0.89[AFR][1000 genomes]
rs10134109	0.89[AFR][1000 genomes]
rs10138881	1.00[AFR][1000 genomes]
rs10139190	1.00[AFR][1000 genomes]
rs10139892	0.89[AFR][1000 genomes]
rs10141632	0.89[AFR][1000 genomes]
rs10143944	1.00[AFR][1000 genomes]
rs10144478	0.90[AFR][1000 genomes]
rs10144701	0.89[AFR][1000 genomes]
rs10145479	0.89[AFR][1000 genomes]
rs10146253	0.89[AFR][1000 genomes]
rs10146510	0.89[AFR][1000 genomes]
rs10162357	1.00[AFR][1000 genomes]
rs10162579	1.00[AFR][1000 genomes]
rs10220481	0.89[AFR][1000 genomes]
rs17102765	0.89[AFR][1000 genomes]
rs17102767	0.89[AFR][1000 genomes]
rs17102769	0.89[AFR][1000 genomes]
rs28370375	0.89[AFR][1000 genomes]
rs28375638	1.00[AFR][1000 genomes]
rs28415772	0.89[AFR][1000 genomes]
rs28452937	0.89[AFR][1000 genomes]
rs28612256	1.00[AFR][1000 genomes]
rs28682570	0.89[AFR][1000 genomes]
rs28789509	0.89[AFR][1000 genomes]
rs28808288	0.89[AFR][1000 genomes]
rs28808905	0.89[AFR][1000 genomes]
rs28864090	0.89[AFR][1000 genomes]
rs28890806	0.89[AFR][1000 genomes]
rs57330939	0.82[AFR][1000 genomes]
rs73286155	0.90[AFR][1000 genomes]
rs73286159	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv902026	chr14:66061020-66171541	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66077600-66114400	Weak transcription	Ovary	ovary
2	chr14:66078000-66100600	Weak transcription	Brain Angular Gyrus	brain
3	chr14:66079400-66104400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:66079600-66104400	Weak transcription	Gastric	stomach
5	chr14:66080000-66100400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:66080800-66117600	Weak transcription	Left Ventricle	heart
7	chr14:66081400-66100200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:66081400-66142200	Weak transcription	Thymus	Thymus
9	chr14:66081800-66112400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:66082200-66112600	Weak transcription	NHDF-Ad	bronchial
11	chr14:66082600-66101400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:66082800-66117600	Weak transcription	Aorta	Aorta
13	chr14:66083000-66101600	Weak transcription	Brain Germinal Matrix	brain
14	chr14:66083200-66103200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr14:66084600-66104400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:66084800-66104000	Weak transcription	Stomach Mucosa	stomach
17	chr14:66086400-66119600	Weak transcription	Pancreas	Pancrea
18	chr14:66088200-66101400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr14:66090600-66103200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr14:66090800-66145000	Weak transcription	Small Intestine	intestine
21	chr14:66091800-66104000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr14:66092400-66100800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr14:66092800-66141000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr14:66093800-66104200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr14:66095200-66101800	Weak transcription	Fetal Lung	lung
26	chr14:66095800-66101200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr14:66096000-66105400	Weak transcription	HUVEC	blood vessel
28	chr14:66096600-66103200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr14:66096800-66103000	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr14:66097000-66100200	Weak transcription	Brain Anterior Caudate	brain
31	chr14:66097800-66101200	Weak transcription	Primary B cells from cord blood	blood
32	chr14:66097800-66104600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr14:66098000-66102200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr14:66098000-66102800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr14:66098000-66104400	Weak transcription	NH-A	brain
36	chr14:66098000-66116000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr14:66098000-66125000	Weak transcription	Brain Substantia Nigra	brain
38	chr14:66098200-66101600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr14:66098200-66101800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr14:66098200-66102600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr14:66098200-66103000	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr14:66098200-66115200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr14:66098200-66118800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr14:66098400-66101600	Weak transcription	GM12878-XiMat	blood
45	chr14:66098400-66103200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr14:66098600-66101600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr14:66098800-66100400	Weak transcription	Adipose Nuclei	Adipose
48	chr14:66099000-66104400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr14:66099000-66135200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr14:66099200-66104400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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