Variant report

Variant	rs10135430
Chromosome Location	chr14:65778274-65778275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65763015..65765090-chr14:65776527..65778731,2	MCF-7	breast:
2	chr14:65521820..65524222-chr14:65777692..65780130,2	K562	blood:
3	chr14:65777339..65780781-chr14:65877685..65881276,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10047886	0.89[AFR][1000 genomes]
rs10130270	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10131095	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10132304	0.89[AFR][1000 genomes]
rs10135555	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10136600	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10137309	1.00[AMR][1000 genomes]
rs10137961	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10138521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142126	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10142520	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10143378	1.00[AFR][1000 genomes]
rs10143537	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148449	1.00[AFR][1000 genomes]
rs10149224	1.00[AFR][1000 genomes]
rs10150033	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10150248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150722	1.00[AFR][1000 genomes]
rs10151906	1.00[AFR][1000 genomes]
rs17102622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102656	1.00[YRI][hapmap]
rs1871746	0.89[AFR][1000 genomes]
rs2152376	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs28438882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28459646	0.89[AFR][1000 genomes]
rs28462250	0.89[AFR][1000 genomes]
rs28482071	1.00[AFR][1000 genomes]
rs28489429	1.00[AFR][1000 genomes]
rs28546829	0.89[AFR][1000 genomes]
rs28550810	0.89[AFR][1000 genomes]
rs28583895	1.00[AFR][1000 genomes]
rs28654875	0.89[AFR][1000 genomes]
rs28708772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9323458	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65760000-65781000	Weak transcription	Primary B cells from cord blood	blood
2	chr14:65769200-65782400	Weak transcription	Gastric	stomach
3	chr14:65769400-65783600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:65771200-65782400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr14:65772400-65778600	Weak transcription	Stomach Mucosa	stomach
6	chr14:65772400-65787800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr14:65772800-65781000	Weak transcription	Primary T cells from cord blood	blood
8	chr14:65774200-65778400	Weak transcription	Fetal Intestine Small	intestine
9	chr14:65774400-65778600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr14:65777200-65778400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr14:65777600-65778400	Weak transcription	GM12878-XiMat	blood

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