Variant report

Variant	rs10135555
Chromosome Location	chr14:65836366-65836367
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65835959..65837879-chr14:65878937..65880482,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10047886	0.89[AFR][1000 genomes]
rs10129221	1.00[YRI][hapmap]
rs10129828	1.00[YRI][hapmap]
rs10130270	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10131095	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10132304	0.89[AFR][1000 genomes]
rs10135430	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10136600	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10137309	1.00[AMR][1000 genomes]
rs10137961	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10138521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142126	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10142520	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10143378	1.00[AFR][1000 genomes]
rs10143537	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148449	1.00[AFR][1000 genomes]
rs10149224	1.00[AFR][1000 genomes]
rs10150033	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10150248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150722	1.00[AFR][1000 genomes]
rs10151906	1.00[AFR][1000 genomes]
rs17102622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102656	1.00[YRI][hapmap]
rs17102765	1.00[YRI][hapmap]
rs17102767	1.00[YRI][hapmap]
rs17102769	1.00[YRI][hapmap]
rs1871746	0.89[AFR][1000 genomes]
rs2152376	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs28438882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28459646	0.89[AFR][1000 genomes]
rs28462250	0.89[AFR][1000 genomes]
rs28482071	1.00[AFR][1000 genomes]
rs28489429	1.00[AFR][1000 genomes]
rs28546829	0.89[AFR][1000 genomes]
rs28550810	0.89[AFR][1000 genomes]
rs28583895	1.00[AFR][1000 genomes]
rs28654875	0.89[AFR][1000 genomes]
rs28708772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9323458	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65824400-65839800	Weak transcription	Primary T cells from cord blood	blood
2	chr14:65824600-65839800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:65826400-65840000	Weak transcription	Brain Substantia Nigra	brain
4	chr14:65829200-65840000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:65834200-65837400	Weak transcription	GM12878-XiMat	blood
6	chr14:65834200-65838600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr14:65834200-65843800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr14:65834400-65837400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:65834400-65839400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr14:65834400-65839600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:65834600-65837400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr14:65834600-65837400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:65834600-65837400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr14:65834600-65840200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr14:65835600-65836800	Enhancers	Placenta	Placenta
16	chr14:65835800-65836400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr14:65835800-65836400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:65835800-65836400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr14:65835800-65836600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:65835800-65836600	Enhancers	Placenta Amnion	Placenta Amnion
21	chr14:65836200-65836600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:65836200-65836600	Enhancers	Brain Cingulate Gyrus	brain
23	chr14:65836200-65836800	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr14:65836200-65836800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr14:65836200-65837800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links