Variant report

Variant	rs10135558
Chromosome Location	chr14:33098582-33098583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33081326..33083127-chr14:33096469..33099467,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10129321	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139992	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140278	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10143113	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10782379	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11627076	0.81[AMR][1000 genomes]
rs11627900	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433067	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12437429	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1569976	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7153041	0.83[AMR][1000 genomes]
rs7160301	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33072200-33103600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:33078800-33102600	Weak transcription	Aorta	Aorta
3	chr14:33080000-33104200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:33089600-33102600	Weak transcription	Psoas Muscle	Psoas
5	chr14:33092400-33102800	Weak transcription	Right Ventricle	heart
6	chr14:33093200-33102800	Weak transcription	Left Ventricle	heart
7	chr14:33093200-33103600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:33093200-33104200	Weak transcription	HSMM	muscle
9	chr14:33093800-33104000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:33094000-33102400	Weak transcription	NHDF-Ad	bronchial
11	chr14:33096200-33102800	Weak transcription	HSMMtube	muscle
12	chr14:33096800-33098800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:33096800-33102400	Weak transcription	Brain Hippocampus Middle	brain
14	chr14:33096800-33105400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:33097200-33101800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr14:33097400-33101000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:33097800-33099400	Enhancers	Brain Cingulate Gyrus	brain
18	chr14:33098000-33100800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr14:33098000-33104200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr14:33098200-33098800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:33098200-33098800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr14:33098200-33099200	Enhancers	Brain Germinal Matrix	brain
23	chr14:33098200-33099200	Enhancers	Brain Substantia Nigra	brain
24	chr14:33098200-33099200	Enhancers	Fetal Muscle Leg	muscle
25	chr14:33098400-33098600	Enhancers	Fetal Heart	heart

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