Variant report

Variant	rs10135756
Chromosome Location	chr14:37529190-37529191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37527584..37529968-chr14:37590390..37592949,2	MCF-7	breast:
2	chr14:37528200..37530680-chr14:37600178..37602513,2	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10047907	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10047908	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10131531	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10133042	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10136755	0.98[EUR][1000 genomes]
rs10136870	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10137539	0.84[EUR][1000 genomes]
rs10137595	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10137611	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10139726	0.84[EUR][1000 genomes]
rs10143832	0.85[EUR][1000 genomes]
rs10148080	0.81[EUR][1000 genomes]
rs10148097	0.81[EUR][1000 genomes]
rs10148311	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10148351	0.88[ASN][1000 genomes]
rs10148426	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10483486	0.84[EUR][1000 genomes]
rs11156932	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12433348	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12879259	0.84[EUR][1000 genomes]
rs12892230	0.84[EUR][1000 genomes]
rs12892728	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12894067	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12894251	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12897058	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12897101	0.84[EUR][1000 genomes]
rs13353107	0.83[EUR][1000 genomes]
rs1467484	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467485	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467486	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1467487	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467488	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467489	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467490	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467491	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467492	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467493	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1535239	0.85[EUR][1000 genomes]
rs1555333	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17106133	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1956422	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956425	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2180600	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2415374	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2415375	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2415376	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2415377	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2415378	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28437272	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28466578	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34592617	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35341876	0.84[EUR][1000 genomes]
rs35844261	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36105433	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4328351	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4408459	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58079830	0.84[EUR][1000 genomes]
rs6571773	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6571774	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6571775	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571776	0.84[EUR][1000 genomes]
rs6571778	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571779	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6571780	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7142225	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs714268	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs714269	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7143414	0.85[EUR][1000 genomes]
rs7146275	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7149154	0.98[EUR][1000 genomes]
rs7149490	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7153530	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7160964	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7359049	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7359050	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8004339	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8005022	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8008894	0.85[EUR][1000 genomes]
rs8008912	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8009178	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011715	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014426	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014914	0.97[EUR][1000 genomes]
rs8015845	0.85[EUR][1000 genomes]
rs8016428	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8016567	0.84[EUR][1000 genomes]
rs8017060	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8022248	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9888610	0.88[ASN][1000 genomes]
rs9919903	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1036201	chr14:37498841-37542041	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037719	chr14:37498841-37546359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv526786	chr14:37499904-37537352	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1048854	chr14:37505438-37546359	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37526400-37529200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr14:37526400-37529200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:37526400-37530000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr14:37526600-37529600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr14:37526600-37529800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:37526600-37530200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:37527200-37539800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr14:37528600-37530800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr14:37528800-37531200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr14:37529000-37529200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:37529000-37530600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr14:37529000-37530800	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links