Variant report

Variant	rs10136303
Chromosome Location	chr14:37404578-37404579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10130699	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1367030	0.85[EUR][1000 genomes]
rs2022719	0.80[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2774042	0.81[CEU][hapmap]
rs712388	0.81[CEU][hapmap]
rs712391	0.86[CEU][hapmap]
rs712392	0.82[CEU][hapmap]
rs712395	0.86[CEU][hapmap]
rs712398	0.85[CEU][hapmap]
rs712401	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7148646	0.81[CEU][hapmap];0.91[CHB][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7160143	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8014926	0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs8015869	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs848691	0.86[CEU][hapmap]
rs848692	0.81[CEU][hapmap]
rs848700	0.90[CEU][hapmap]
rs861926	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1050254	chr14:37400173-37445157	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37402400-37406800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr14:37402600-37406200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:37403200-37405400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr14:37404400-37404600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr14:37404400-37405800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:37404400-37406000	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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