Variant report

Variant	rs10136529
Chromosome Location	chr14:70284900-70284901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70284000..70285819-chr14:70633377..70635928,2	K562	blood:
2	chr14:70284835..70286537-chr14:70493931..70495236,17	MCF-7	breast:
3	chr14:70284132..70286001-chr14:70493432..70495092,2	MCF-7	breast:
4	chr14:70284087..70286942-chr14:70495674..70497567,4	MCF-7	breast:
5	chr14:70284892..70285665-chr14:70540396..70541290,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100678	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10130926	0.83[ASN][1000 genomes]
rs10136397	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10142027	0.91[EUR][1000 genomes]
rs10142031	0.91[EUR][1000 genomes]
rs10142686	0.88[EUR][1000 genomes]
rs10146537	0.85[ASN][1000 genomes]
rs10148404	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10151895	0.90[EUR][1000 genomes]
rs10459536	0.92[EUR][1000 genomes]
rs11620808	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11622925	0.81[ASN][1000 genomes]
rs11623262	0.88[ASN][1000 genomes]
rs11624523	0.92[EUR][1000 genomes]
rs11627012	0.94[ASN][1000 genomes]
rs11627089	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11628423	0.94[ASN][1000 genomes]
rs11628546	0.94[ASN][1000 genomes]
rs11628665	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12431573	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13313365	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs13313366	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs13313388	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs14411	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17328	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1953400	0.91[EUR][1000 genomes]
rs2148503	0.91[EUR][1000 genomes]
rs2148505	0.91[EUR][1000 genomes]
rs2332167	0.93[EUR][1000 genomes]
rs28437671	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs28480224	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs28490548	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2877598	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28785205	0.94[ASN][1000 genomes]
rs3104	0.91[EUR][1000 genomes]
rs3784152	0.92[EUR][1000 genomes]
rs3784153	0.92[EUR][1000 genomes]
rs4646285	0.81[ASN][1000 genomes]
rs4646286	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4646297	0.91[EUR][1000 genomes]
rs4902755	0.91[EUR][1000 genomes]
rs4902756	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902757	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56177148	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs59066042	0.96[ASN][1000 genomes]
rs60442313	0.91[EUR][1000 genomes]
rs61356864	0.81[ASN][1000 genomes]
rs6573907	0.88[EUR][1000 genomes]
rs6573908	0.91[EUR][1000 genomes]
rs6573909	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7142868	0.88[EUR][1000 genomes]
rs7152290	0.95[EUR][1000 genomes]
rs7153496	0.88[EUR][1000 genomes]
rs7154439	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8005609	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8011311	0.95[EUR][1000 genomes]
rs8013598	0.91[EUR][1000 genomes]
rs8014236	0.87[EUR][1000 genomes]
rs8021735	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9944036	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70280000-70285200	Weak transcription	Hela-S3	cervix
2	chr14:70281200-70285200	Weak transcription	HepG2	liver
3	chr14:70282400-70287800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:70283600-70286000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:70284200-70288200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:70284800-70285000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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