Variant report

Variant	rs10136600
Chromosome Location	chr14:65949428-65949429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65949225..65952104-chr14:65958180..65961178,2	MCF-7	breast:
2	chr14:65948089..65950206-chr14:65970318..65973170,3	MCF-7	breast:
3	chr14:65948068..65949593-chr14:65950471..65953165,2	MCF-7	breast:
4	chr14:65942071..65945290-chr14:65946975..65950511,4	K562	blood:
5	chr14:65948224..65950204-chr14:65953651..65955284,2	K562	blood:
6	chr14:65948634..65950840-chr14:65951192..65953679,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10047886	0.89[AFR][1000 genomes]
rs10129221	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10129828	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10130270	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10131095	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131616	1.00[AMR][1000 genomes]
rs10132304	0.89[AFR][1000 genomes]
rs10135430	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10135555	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10137961	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10138521	1.00[AFR][1000 genomes]
rs10138881	1.00[AMR][1000 genomes]
rs10139190	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10140494	1.00[AMR][1000 genomes]
rs10142126	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10142520	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143537	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10143944	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10144478	1.00[AMR][1000 genomes]
rs10146510	1.00[AMR][1000 genomes]
rs10148449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149224	1.00[AFR][1000 genomes]
rs10150033	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150248	1.00[AFR][1000 genomes]
rs10150722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151906	1.00[AFR][1000 genomes]
rs10162357	1.00[AMR][1000 genomes]
rs10162579	1.00[AMR][1000 genomes]
rs17102622	1.00[AFR][1000 genomes]
rs17102656	1.00[YRI][hapmap]
rs17102765	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17102767	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17102769	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1871746	0.89[AFR][1000 genomes]
rs2152376	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28370375	1.00[AMR][1000 genomes]
rs28375638	1.00[AMR][1000 genomes]
rs28438882	1.00[AFR][1000 genomes]
rs28459646	0.89[AFR][1000 genomes]
rs28462250	0.89[AFR][1000 genomes]
rs28482071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28546829	0.89[AFR][1000 genomes]
rs28550810	0.89[AFR][1000 genomes]
rs28583895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654875	0.89[AFR][1000 genomes]
rs28708772	1.00[AFR][1000 genomes]
rs28716649	1.00[AMR][1000 genomes]
rs28789146	1.00[AMR][1000 genomes]
rs28808288	1.00[AMR][1000 genomes]
rs28864090	1.00[AMR][1000 genomes]
rs28890806	1.00[AMR][1000 genomes]
rs57330939	1.00[AMR][1000 genomes]
rs73286159	1.00[AMR][1000 genomes]
rs9323458	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65931400-65966200	Weak transcription	Aorta	Aorta
2	chr14:65936600-65957400	Weak transcription	Primary B cells from cord blood	blood
3	chr14:65937200-65949600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:65937400-65961600	Weak transcription	Fetal Intestine Large	intestine
5	chr14:65937600-65949600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:65938000-65952000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr14:65938400-65963400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr14:65938600-65949600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr14:65938800-65952000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:65939000-65969400	Weak transcription	Dnd41	blood
11	chr14:65940600-65959400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr14:65942600-65949600	Weak transcription	Fetal Intestine Small	intestine
13	chr14:65943200-65951800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:65945200-65950600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr14:65945200-65980000	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr14:65945600-65949600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr14:65945600-65959000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr14:65946000-65949600	Weak transcription	Osteobl	bone
19	chr14:65946000-65954400	Weak transcription	Primary T cells from cord blood	blood
20	chr14:65946400-65949600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:65946400-65949600	Weak transcription	NH-A	brain
22	chr14:65946400-65954800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr14:65947400-65950200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr14:65947800-65950200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr14:65947800-65950200	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr14:65948000-65949600	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr14:65948800-65950000	Enhancers	Brain Hippocampus Middle	brain
28	chr14:65949000-65949600	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr14:65949000-65949600	Enhancers	Colon Smooth Muscle	Colon
30	chr14:65949000-65949800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr14:65949000-65950000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr14:65949000-65950000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr14:65949000-65950200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr14:65949000-65950200	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr14:65949200-65949600	Enhancers	Brain Angular Gyrus	brain
36	chr14:65949200-65949600	Genic enhancers	Brain Anterior Caudate	brain
37	chr14:65949200-65949600	Enhancers	Brain Substantia Nigra	brain
38	chr14:65949200-65949600	Enhancers	Stomach Smooth Muscle	stomach
39	chr14:65949200-65949600	Enhancers	K562	blood
40	chr14:65949200-65949800	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr14:65949200-65950000	Enhancers	H1 Cell Line	embryonic stem cell
42	chr14:65949200-65950000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:65949200-65950000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr14:65949200-65950000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr14:65949200-65950000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr14:65949200-65950000	Genic enhancers	Duodenum Mucosa	Duodenum
47	chr14:65949200-65950000	Enhancers	Stomach Mucosa	stomach
48	chr14:65949200-65950200	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr14:65949200-65950200	Enhancers	Primary B cells from peripheral blood	blood
50	chr14:65949200-65950200	Enhancers	Brain Cingulate Gyrus	brain

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