Variant report

Variant	rs10137309
Chromosome Location	chr14:65882743-65882744
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65685385..65700060-chr14:65874568..65884730,76	MCF-7	breast:
2	chr14:65882552..65883151-chr14:66291137..66291691,2	MCF-7	breast:
3	chr14:65881120..65883411-chr14:65884854..65887991,3	MCF-7	breast:
4	chr14:65682951..65699539-chr14:65874873..65882779,51	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255002	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10135430	1.00[AMR][1000 genomes]
rs10135555	1.00[AMR][1000 genomes]
rs10138521	1.00[AMR][1000 genomes]
rs10143537	1.00[AMR][1000 genomes]
rs10150248	1.00[AMR][1000 genomes]
rs17102622	1.00[AMR][1000 genomes]
rs28438882	1.00[AMR][1000 genomes]
rs28708772	1.00[AMR][1000 genomes]
rs9323458	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	nsv510639	chr14:65853883-65884315	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65877600-65885400	Active TSS	GM12878-XiMat	blood
2	chr14:65880600-65886400	Weak transcription	K562	blood
3	chr14:65880600-65899400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:65880600-65899400	Weak transcription	Small Intestine	intestine
5	chr14:65880800-65884000	Weak transcription	Stomach Mucosa	stomach
6	chr14:65880800-65888000	Weak transcription	Ovary	ovary
7	chr14:65880800-65896800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:65880800-65898000	Weak transcription	Gastric	stomach
9	chr14:65880800-65904800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr14:65881000-65883800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr14:65881000-65888000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:65881000-65888000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:65881000-65899400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr14:65881000-65902600	Weak transcription	Fetal Intestine Small	intestine
15	chr14:65881600-65882800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr14:65881600-65882800	Enhancers	Brain Germinal Matrix	brain
17	chr14:65881600-65885400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr14:65881600-65886600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr14:65881600-65888000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr14:65881600-65888000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr14:65881600-65888000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr14:65881600-65888400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr14:65881600-65889600	Weak transcription	Fetal Brain Male	brain
24	chr14:65881800-65882800	Weak transcription	HepG2	liver
25	chr14:65881800-65883200	Enhancers	Primary T cells from cord blood	blood
26	chr14:65881800-65883200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr14:65881800-65883200	Enhancers	Brain Anterior Caudate	brain
28	chr14:65881800-65883600	Weak transcription	Brain Hippocampus Middle	brain
29	chr14:65881800-65888000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr14:65881800-65888600	Weak transcription	Brain Angular Gyrus	brain
31	chr14:65881800-65895000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr14:65881800-65901000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr14:65881800-65902000	Weak transcription	Primary B cells from cord blood	blood
34	chr14:65881800-65902000	Weak transcription	Fetal Intestine Large	intestine
35	chr14:65882000-65886400	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr14:65882000-65888000	Weak transcription	NH-A	brain
37	chr14:65882200-65888000	Weak transcription	HUVEC	blood vessel
38	chr14:65882200-65890600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr14:65882400-65882800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr14:65882400-65883000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr14:65882400-65883800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr14:65882400-65884800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr14:65882400-65886000	Weak transcription	Brain Substantia Nigra	brain
44	chr14:65882400-65888600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr14:65882400-65890400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr14:65882600-65882800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr14:65882600-65883200	Enhancers	Fetal Brain Female	brain
48	chr14:65882600-65884600	Enhancers	Dnd41	blood
49	chr14:65882600-65900200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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