Variant report

Variant	rs10137342
Chromosome Location	chr14:81679528-81679529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10130030	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135816	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10136239	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10140780	0.90[AFR][1000 genomes]
rs10145323	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10148333	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11851828	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12437268	0.82[JPT][hapmap]
rs17094177	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17111611	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17111627	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs17111651	1.00[JPT][hapmap]
rs17111691	1.00[JPT][hapmap]
rs2033255	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28656130	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3815952	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4640110	0.81[AFR][1000 genomes]
rs59666109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73344366	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73346377	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8005919	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9323697	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
2	nsv902117	chr14:81643800-81682392	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81637000-81683800	Weak transcription	Small Intestine	intestine
2	chr14:81643800-81683200	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr14:81644200-81683600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr14:81644600-81685400	Weak transcription	Right Ventricle	heart
5	chr14:81651000-81685000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:81652600-81685400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr14:81654200-81683200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:81656600-81682800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:81656600-81683000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr14:81656600-81683400	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:81660800-81685400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:81661000-81685400	Weak transcription	Aorta	Aorta
13	chr14:81662600-81684600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr14:81662800-81685400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:81663000-81683200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr14:81663000-81683800	Weak transcription	Fetal Brain Male	brain
17	chr14:81666400-81683400	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr14:81666800-81685000	Weak transcription	Stomach Mucosa	stomach
19	chr14:81667000-81682800	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr14:81667000-81682800	Strong transcription	Fetal Thymus	thymus
21	chr14:81667400-81683200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:81667600-81684000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:81667800-81682000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr14:81669600-81684600	Weak transcription	HSMMtube	muscle
25	chr14:81670600-81685200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr14:81671200-81683400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr14:81672600-81682400	Strong transcription	Fetal Intestine Large	intestine
28	chr14:81672800-81684600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr14:81673600-81683600	ZNF genes & repeats	GM12878-XiMat	blood
30	chr14:81674000-81681600	Weak transcription	Fetal Brain Female	brain
31	chr14:81674000-81684000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr14:81674000-81685000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr14:81674000-81685400	Weak transcription	Colonic Mucosa	Colon
34	chr14:81674200-81681600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr14:81674400-81681200	Weak transcription	HUVEC	blood vessel
36	chr14:81675000-81681800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr14:81675200-81680200	Weak transcription	Fetal Stomach	stomach
38	chr14:81675200-81681600	Weak transcription	Ovary	ovary
39	chr14:81675200-81683800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr14:81675200-81683800	Weak transcription	Lung	lung
41	chr14:81675200-81685000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr14:81675200-81685400	Weak transcription	Pancreas	Pancrea
43	chr14:81675200-81685600	Weak transcription	Gastric	stomach
44	chr14:81675400-81679800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr14:81675400-81679800	Weak transcription	HepG2	liver
46	chr14:81675400-81681000	Weak transcription	Adipose Nuclei	Adipose
47	chr14:81675400-81683800	Weak transcription	Spleen	Spleen
48	chr14:81675400-81685400	Weak transcription	Esophagus	oesophagus
49	chr14:81675600-81683400	Strong transcription	HSMM	muscle
50	chr14:81675600-81684600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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