Variant report

Variant	rs10137464
Chromosome Location	chr14:65785829-65785830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:65785700-65785850	GM12873	blood:	n/a	n/a
2	SPI1	chr14:65784906-65786267	GM12878	blood:	n/a	chr14:65786101-65786114 chr14:65785645-65785654
3	IKZF1	chr14:65784849-65786480	GM12878	blood:	n/a	chr14:65785672-65785680
4	CEBPB	chr14:65785158-65785946	GM12878	blood:	n/a	chr14:65785221-65785229
5	MTA3	chr14:65784450-65786633	GM12878	blood:	n/a	n/a
6	RUNX3	chr14:65784507-65786210	GM12878	blood:	n/a	n/a
7	POLR2A	chr14:65784444-65786340	GM12892	blood:	n/a	n/a
8	NFIC	chr14:65785205-65785949	GM12878	blood:	n/a	n/a
9	POLR2A	chr14:65784539-65786571	GM12878	blood:	n/a	n/a
10	ATF2	chr14:65785138-65785843	GM12878	blood:	n/a	n/a
11	ATF2	chr14:65784756-65785924	GM12878	blood:	n/a	n/a
12	SPI1	chr14:65785316-65785862	GM12891	blood:	n/a	chr14:65785645-65785654
13	POLR2A	chr14:65784449-65786800	GM12892	blood:	n/a	n/a
14	POLR2A	chr14:65784484-65785834	GM12892	blood:	n/a	n/a
15	EBF1	chr14:65784687-65785838	GM12878	blood:	n/a	chr14:65785517-65785528
16	RUNX3	chr14:65784479-65786224	GM12878	blood:	n/a	n/a
17	FOXM1	chr14:65785210-65785839	GM12878	blood:	n/a	n/a
18	POLR2A	chr14:65784161-65785834	GM12892	blood:	n/a	n/a
19	NFIC	chr14:65784556-65786361	GM12878	blood:	n/a	n/a
20	SPI1	chr14:65785330-65785840	GM12891	blood:	n/a	chr14:65785645-65785654
21	STAT5A	chr14:65785141-65785905	GM12878	blood:	n/a	n/a
22	POLR2A	chr14:65784545-65786608	GM12891	blood:	n/a	n/a
23	BCLAF1	chr14:65784777-65786367	GM12878	blood:	n/a	n/a
24	MEF2A	chr14:65785266-65785830	GM12878	blood:	n/a	n/a
25	FOXM1	chr14:65784537-65785871	GM12878	blood:	n/a	n/a
26	PML	chr14:65784431-65786016	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000258760	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10134589	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138662	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10142617	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10144975	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11158587	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11847263	0.80[AFR][1000 genomes]
rs17102587	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17102598	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902383	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4902385	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902386	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57071950	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573598	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573599	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573600	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6573602	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573604	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151212	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151301	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156013	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8004239	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8006316	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012054	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8013568	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8017974	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8019473	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8019767	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65772400-65787800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr14:65779400-65787800	Weak transcription	Fetal Intestine Large	intestine
3	chr14:65781400-65786200	Weak transcription	Stomach Mucosa	stomach
4	chr14:65781600-65787600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr14:65784000-65786000	Weak transcription	Small Intestine	intestine
6	chr14:65784200-65786800	Weak transcription	Fetal Intestine Small	intestine
7	chr14:65784200-65787400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr14:65784600-65786400	Flanking Active TSS	GM12878-XiMat	blood
9	chr14:65784800-65786200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:65784800-65786600	Enhancers	Primary T cells from cord blood	blood
11	chr14:65785000-65786600	Weak transcription	Thymus	Thymus
12	chr14:65785200-65786200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr14:65785400-65787800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr14:65785400-65787800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr14:65785600-65787600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:65785600-65787800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr14:65785600-65788000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr14:65785600-65788000	Weak transcription	Fetal Thymus	thymus
19	chr14:65785600-65788800	Enhancers	Primary B cells from cord blood	blood
20	chr14:65785600-65791000	Enhancers	Primary B cells from peripheral blood	blood
21	chr14:65785800-65787800	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links