Variant report

Variant	rs10137961
Chromosome Location	chr14:65900195-65900196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65879008..65881327-chr14:65899044..65901379,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10047886	0.89[AFR][1000 genomes]
rs10129221	1.00[YRI][hapmap]
rs10129828	1.00[YRI][hapmap]
rs10130270	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10131095	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10132304	0.89[AFR][1000 genomes]
rs10135430	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10135555	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10136600	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10138521	1.00[AFR][1000 genomes]
rs10142126	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142520	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10143378	1.00[AFR][1000 genomes]
rs10143537	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10148449	1.00[AFR][1000 genomes]
rs10149224	1.00[AFR][1000 genomes]
rs10150033	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10150248	1.00[AFR][1000 genomes]
rs10150722	1.00[AFR][1000 genomes]
rs10151906	1.00[AFR][1000 genomes]
rs17102622	1.00[AFR][1000 genomes]
rs17102656	1.00[YRI][hapmap]
rs17102765	1.00[YRI][hapmap]
rs17102767	1.00[YRI][hapmap]
rs17102769	1.00[YRI][hapmap]
rs1871746	0.89[AFR][1000 genomes]
rs2152376	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs28438882	1.00[AFR][1000 genomes]
rs28459646	0.89[AFR][1000 genomes]
rs28462250	0.89[AFR][1000 genomes]
rs28482071	1.00[AFR][1000 genomes]
rs28489429	1.00[AFR][1000 genomes]
rs28546829	0.89[AFR][1000 genomes]
rs28550810	0.89[AFR][1000 genomes]
rs28583895	1.00[AFR][1000 genomes]
rs28654875	0.89[AFR][1000 genomes]
rs28708772	1.00[AFR][1000 genomes]
rs9323458	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65880800-65904800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr14:65881000-65902600	Weak transcription	Fetal Intestine Small	intestine
3	chr14:65881800-65901000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:65881800-65902000	Weak transcription	Primary B cells from cord blood	blood
5	chr14:65881800-65902000	Weak transcription	Fetal Intestine Large	intestine
6	chr14:65882600-65900200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:65886600-65905600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr14:65888400-65905400	Weak transcription	Ovary	ovary
9	chr14:65889000-65901400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:65891200-65900400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr14:65891600-65904000	Weak transcription	Lung	lung
12	chr14:65891800-65904400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr14:65892800-65929600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr14:65893000-65917600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:65893600-65902200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:65897000-65925600	Weak transcription	Aorta	Aorta
17	chr14:65898000-65901200	Enhancers	Dnd41	blood
18	chr14:65898400-65900200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr14:65898400-65900200	Enhancers	K562	blood
20	chr14:65898400-65900800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr14:65898400-65901400	Enhancers	Osteobl	bone
22	chr14:65898400-65901600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr14:65898400-65935600	Weak transcription	Gastric	stomach
24	chr14:65898600-65900800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr14:65898800-65900200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:65898800-65900400	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr14:65898800-65900400	Enhancers	Adipose Nuclei	Adipose
28	chr14:65898800-65901200	Enhancers	Primary B cells from peripheral blood	blood
29	chr14:65898800-65901200	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr14:65899000-65901000	Enhancers	Brain Cingulate Gyrus	brain
31	chr14:65899000-65902200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr14:65899000-65903600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr14:65899200-65900600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr14:65899200-65900600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr14:65899200-65901200	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr14:65899200-65901600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr14:65899200-65913000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr14:65899400-65900200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr14:65899400-65900200	Enhancers	NHDF-Ad	bronchial
40	chr14:65899400-65900400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr14:65899400-65901000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr14:65899400-65901200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr14:65899400-65901400	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr14:65899400-65901800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr14:65899600-65900200	Weak transcription	Brain Anterior Caudate	brain
46	chr14:65899600-65900400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr14:65899600-65900400	Weak transcription	Brain Substantia Nigra	brain
48	chr14:65899600-65900400	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr14:65899600-65900800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr14:65899600-65900800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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